MTND2P40 (MT-ND2 pseudogene 40) - Rat Genome Database

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Gene: MTND2P40 (MT-ND2 pseudogene 40) Homo sapiens
Analyze
Symbol: MTND2P40
Name: MT-ND2 pseudogene 40
RGD ID: 10450403
HGNC Page HGNC:52084
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 40
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,502,675 - 12,504,106 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,502,675 - 12,504,106 (+)EnsemblGRCh38hg38GRCh38
GRCh371912,613,489 - 12,614,920 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19p13.2NCBI
CHM1_11912,613,421 - 12,614,838 (+)NCBICHM1_1
T2T-CHM13v2.01912,631,081 - 12,632,512 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:231
Count of miRNA genes:224
Interacting mature miRNAs:230
Transcripts:ENST00000436718
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2
Low 59 45 69 20 131 16 174 10 163 46 237 132 6 9 61
Below cutoff 1548 1597 973 262 753 147 2573 1119 2176 236 930 1056 121 704 1657 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000436718
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1912,502,675 - 12,504,106 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MTND2P40 COSMIC
Ensembl Genes ENSG00000236483 Ensembl, ENTREZGENE
GTEx ENSG00000236483 GTEx
HGNC ID HGNC:52084 ENTREZGENE
Human Proteome Map MTND2P40 Human Proteome Map
NCBI Gene MTND2P40 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-05 MTND2P40  MT-ND2 pseudogene 40    mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 40  Symbol and/or name change 5135510 APPROVED