SEPTIN14P12 (septin 14 pseudogene 12) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SEPTIN14P12 (septin 14 pseudogene 12) Homo sapiens
Analyze
Symbol: SEPTIN14P12
Name: septin 14 pseudogene 12
RGD ID: 10413690
HGNC Page HGNC:51699
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: SEPT14P12
Related Functional Gene: SEPTIN14  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381197,138,548 - 197,139,307 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1197,138,748 - 197,139,307 (-)EnsemblGRCh38hg38GRCh38
GRCh371197,107,678 - 197,108,437 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q31.3NCBI
CHM1_11198,530,351 - 198,530,910 (-)NCBICHM1_1
T2T-CHM13v2.01196,400,372 - 196,401,131 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:104
Interacting mature miRNAs:104
Transcripts:ENST00000442280
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 4 4
Low 84 33 72 65 406 66 251 48 99 54 242 209 7 3 22 2
Below cutoff 341 330 194 122 406 95 756 91 222 64 438 333 31 147 377 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000442280
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1197,138,748 - 197,139,307 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SEPTIN14P12 COSMIC
Ensembl Genes ENSG00000235748 Ensembl
GTEx ENSG00000235748 GTEx
HGNC ID HGNC:51699 ENTREZGENE
Human Proteome Map SEPTIN14P12 Human Proteome Map
NCBI Gene SEPT14P12 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-09 SEPTIN14P12  septin 14 pseudogene 12  SEPT14P12    Symbol and/or name change 5135510 APPROVED