RN7SL510P (RNA, 7SL, cytoplasmic 510, pseudogene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RN7SL510P (RNA, 7SL, cytoplasmic 510, pseudogene) Homo sapiens
Analyze
Symbol: RN7SL510P
Name: RNA, 7SL, cytoplasmic 510, pseudogene
RGD ID: 10413664
HGNC Page HGNC:46526
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Related Functional Gene: RN7SL1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381575,895,040 - 75,895,302 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1575,895,040 - 75,895,302 (+)EnsemblGRCh38hg38GRCh38
GRCh371576,187,381 - 76,187,643 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q24.2NCBI
T2T-CHM13v2.01573,765,786 - 73,766,048 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:221
Count of miRNA genes:209
Interacting mature miRNAs:216
Transcripts:ENST00000581311
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 3 1 1
Low 226 65 172 68 360 45 517 103 224 66 293 363 35 64 161 4
Below cutoff 949 736 644 168 316 68 1575 583 873 103 549 610 100 577 908

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000581311
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1575,895,040 - 75,895,302 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SL510P COSMIC
Ensembl Genes ENSG00000266308 Ensembl, ENTREZGENE
GTEx ENSG00000266308 GTEx
HGNC ID HGNC:46526 ENTREZGENE
Human Proteome Map RN7SL510P Human Proteome Map
NCBI Gene RN7SL510P ENTREZGENE