RNU6-313P (RNA, U6 small nuclear 313, pseudogene) - Rat Genome Database

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Gene: RNU6-313P (RNA, U6 small nuclear 313, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-313P
Name: RNA, U6 small nuclear 313, pseudogene
RGD ID: 10413660
HGNC Page HGNC:47276
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38766,344,303 - 66,344,414 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl766,344,303 - 66,344,414 (+)EnsemblGRCh38hg38GRCh38
GRCh37765,809,290 - 65,809,401 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q11.21NCBI
CHM1_1765,904,587 - 65,904,698 (+)NCBICHM1_1
T2T-CHM13v2.0767,566,397 - 67,566,508 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-313P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38766,344,303 - 66,344,414 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl766,344,303 - 66,344,414 (+)EnsemblGRCh38hg38GRCh38
GRCh37765,809,290 - 65,809,401 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q11.21NCBI
CHM1_1765,904,587 - 65,904,698 (+)NCBICHM1_1
T2T-CHM13v2.0767,566,397 - 67,566,508 (+)NCBIT2T-CHM13v2.0
LOC120098441
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81858,620,282 - 58,620,388 (-)NCBIGRCr8
mRatBN7.21856,349,983 - 56,350,089 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1856,349,983 - 56,350,089 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1858,223,945 - 58,224,051 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map18q12.1NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:215
Count of miRNA genes:211
Interacting mature miRNAs:213
Transcripts:ENST00000516317
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 68 91 109 63 129 60 178 43 140 57 129 154 6 30 70
Below cutoff 109 139 134 43 117 39 239 76 197 30 122 112 6 81 138 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516317
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl766,344,303 - 66,344,414 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-313P COSMIC
Ensembl Genes ENSG00000252126 Ensembl, ENTREZGENE
GTEx ENSG00000252126 GTEx
HGNC ID HGNC:47276 ENTREZGENE
Human Proteome Map RNU6-313P Human Proteome Map
NCBI Gene RNU6-313P ENTREZGENE