RNU6-767P (RNA, U6 small nuclear 767, pseudogene) - Rat Genome Database

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Gene: RNU6-767P (RNA, U6 small nuclear 767, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-767P
Name: RNA, U6 small nuclear 767, pseudogene
RGD ID: 10413596
HGNC Page HGNC:47730
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381717,170,083 - 17,170,189 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1717,170,083 - 17,170,189 (+)EnsemblGRCh38hg38GRCh38
GRCh371717,073,397 - 17,073,503 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17p11.2NCBI
CHM1_11717,083,024 - 17,083,130 (+)NCBICHM1_1
T2T-CHM13v2.01717,116,136 - 17,116,242 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-767P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381717,170,083 - 17,170,189 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1717,170,083 - 17,170,189 (+)EnsemblGRCh38hg38GRCh38
GRCh371717,073,397 - 17,073,503 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17p11.2NCBI
CHM1_11717,083,024 - 17,083,130 (+)NCBICHM1_1
T2T-CHM13v2.01717,116,136 - 17,116,242 (+)NCBIT2T-CHM13v2.0
Rnu6-767
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82104,157,617 - 104,157,720 (+)NCBIGRCr8
mRatBN7.22102,241,494 - 102,241,597 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2102,241,494 - 102,241,597 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2104,558,890 - 104,558,993 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q24NCBI
LOC119864838
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2017,590,359 - 17,590,464 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02017,657,463 - 17,657,568 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2017,657,463 - 17,657,568 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12017,349,276 - 17,349,381 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02017,694,196 - 17,694,301 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02017,753,651 - 17,753,756 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:124
Interacting mature miRNAs:126
Transcripts:ENST00000384132
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 3 10 1 1 3
Low 327 542 322 116 367 93 1010 322 569 91 370 525 34 191 743 3
Below cutoff 348 457 277 75 115 35 784 432 540 56 249 261 40 233 533 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384132
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1717,170,083 - 17,170,189 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-767P COSMIC
Ensembl Genes ENSG00000206859 Ensembl, ENTREZGENE
GTEx ENSG00000206859 GTEx
HGNC ID HGNC:47730 ENTREZGENE
Human Proteome Map RNU6-767P Human Proteome Map
NCBI Gene RNU6-767P ENTREZGENE