RN7SL535P (RNA, 7SL, cytoplasmic 535, pseudogene) - Rat Genome Database

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Gene: RN7SL535P (RNA, 7SL, cytoplasmic 535, pseudogene) Homo sapiens
Analyze
Symbol: RN7SL535P
Name: RNA, 7SL, cytoplasmic 535, pseudogene
RGD ID: 10413408
HGNC Page HGNC:46551
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Related Functional Gene: RN7SL1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387143,290,621 - 143,290,904 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7143,290,615 - 143,290,910 (+)EnsemblGRCh38hg38GRCh38
GRCh377142,987,714 - 142,987,997 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q34NCBI
CHM1_17142,924,601 - 142,924,884 (+)NCBICHM1_1
T2T-CHM13v2.07144,646,031 - 144,646,314 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:49
Interacting mature miRNAs:50
Transcripts:ENST00000479087
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 12 1 3 1 39 1 1 3 5 5 8
Low 1054 538 589 214 1065 122 2399 346 804 141 623 957 102 701 1202 4
Below cutoff 920 1300 653 202 360 148 1047 961 1078 131 521 431 56 389 760

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000479087
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7143,290,615 - 143,290,910 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SL535P COSMIC
Ensembl Genes ENSG00000239419 Ensembl, ENTREZGENE
GTEx ENSG00000239419 GTEx
HGNC ID HGNC:46551 ENTREZGENE
Human Proteome Map RN7SL535P Human Proteome Map
NCBI Gene RN7SL535P ENTREZGENE