RNU6-278P (RNA, U6 small nuclear 278, pseudogene) - Rat Genome Database

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Gene: RNU6-278P (RNA, U6 small nuclear 278, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-278P
Name: RNA, U6 small nuclear 278, pseudogene
RGD ID: 10413391
HGNC Page HGNC:47241
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382013,973,316 - 13,973,424 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2013,973,316 - 13,973,424 (-)EnsemblGRCh38hg38GRCh38
GRCh372013,953,962 - 13,954,070 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map20p12.1NCBI
CHM1_12013,953,976 - 13,954,084 (-)NCBICHM1_1
T2T-CHM13v2.02014,022,551 - 14,022,659 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-278P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382013,973,316 - 13,973,424 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2013,973,316 - 13,973,424 (-)EnsemblGRCh38hg38GRCh38
GRCh372013,953,962 - 13,954,070 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map20p12.1NCBI
CHM1_12013,953,976 - 13,954,084 (-)NCBICHM1_1
T2T-CHM13v2.02014,022,551 - 14,022,659 (-)NCBIT2T-CHM13v2.0
Gm24185
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,105,989 - 90,106,093 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,105,989 - 90,106,093 (+)EnsemblGRCm39 Ensembl
GRCm38390,198,682 - 90,198,786 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,198,682 - 90,198,786 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3F1NCBI
Rnu6-278
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,948,626 - 177,948,729 (+)NCBIGRCr8
mRatBN7.22175,650,981 - 175,651,084 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,650,981 - 175,651,084 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl2189,557,300 - 189,557,405 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map2q34NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:34
Interacting mature miRNAs:34
Transcripts:ENST00000390945
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system nervous system renal system reproductive system respiratory system
High
Medium
Low 1 1 1 9 1 1 1 5 1
Below cutoff 2 2 1 2 8 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000390945
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2013,973,316 - 13,973,424 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-278P COSMIC
Ensembl Genes ENSG00000212247 Ensembl, ENTREZGENE
GTEx ENSG00000212247 GTEx
HGNC ID HGNC:47241 ENTREZGENE
Human Proteome Map RNU6-278P Human Proteome Map
NCBI Gene RNU6-278P ENTREZGENE