RNU6-201P (RNA, U6 small nuclear 201, pseudogene) - Rat Genome Database

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Gene: RNU6-201P (RNA, U6 small nuclear 201, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-201P
Name: RNA, U6 small nuclear 201, pseudogene
RGD ID: 10413231
HGNC Page HGNC:47164
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,837,238 - 31,837,298 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,837,238 - 31,837,298 (+)EnsemblGRCh38hg38GRCh38
GRCh372232,233,224 - 32,233,284 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map22q12.3NCBI
CHM1_12232,192,815 - 32,192,875 (+)NCBICHM1_1
T2T-CHM13v2.02232,300,920 - 32,300,980 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-201P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,837,238 - 31,837,298 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,837,238 - 31,837,298 (+)EnsemblGRCh38hg38GRCh38
GRCh372232,233,224 - 32,233,284 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map22q12.3NCBI
CHM1_12232,192,815 - 32,192,875 (+)NCBICHM1_1
T2T-CHM13v2.02232,300,920 - 32,300,980 (+)NCBIT2T-CHM13v2.0
LOC119870539
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha235,605,497 - 35,605,601 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0239,013,620 - 39,013,724 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl239,013,620 - 39,013,724 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1236,086,626 - 36,086,730 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0236,900,791 - 36,900,895 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0237,702,439 - 37,702,543 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in RNU6-201P
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:92
Count of miRNA genes:90
Interacting mature miRNAs:92
Transcripts:ENST00000517100
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 9 9 7 8 14 4 7 1 8 7 5 7
Below cutoff 3 3 2 3 5 5 7 1 1 1 4

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000517100
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,837,238 - 31,837,298 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-201P COSMIC
Ensembl Genes ENSG00000252909 Ensembl, ENTREZGENE
GTEx ENSG00000252909 GTEx
HGNC ID HGNC:47164 ENTREZGENE
Human Proteome Map RNU6-201P Human Proteome Map
NCBI Gene RNU6-201P ENTREZGENE