RNU6-1136P (RNA, U6 small nuclear 1136, pseudogene) - Rat Genome Database

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Gene: RNU6-1136P (RNA, U6 small nuclear 1136, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1136P
Name: RNA, U6 small nuclear 1136, pseudogene
RGD ID: 10412611
HGNC Page HGNC:48099
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387102,834,605 - 102,834,708 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7102,834,605 - 102,834,708 (+)EnsemblGRCh38hg38GRCh38
GRCh377102,475,052 - 102,475,155 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q22.1NCBI
CHM1_17102,408,397 - 102,408,500 (+)NCBICHM1_1
T2T-CHM13v2.07104,149,308 - 104,149,411 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:50
Count of miRNA genes:44
Interacting mature miRNAs:45
Transcripts:ENST00000516834
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 4 2 5
Low 516 272 534 196 435 179 806 272 918 210 490 527 22 113 495 3
Below cutoff 523 397 339 117 179 77 844 391 904 70 229 224 40 233 521

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516834
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7102,834,605 - 102,834,708 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1136P COSMIC
Ensembl Genes ENSG00000252643 Ensembl, ENTREZGENE
GTEx ENSG00000252643 GTEx
HGNC ID HGNC:48099 ENTREZGENE
Human Proteome Map RNU6-1136P Human Proteome Map
NCBI Gene RNU6-1136P ENTREZGENE