RNU6-554P (RNA, U6 small nuclear 554, pseudogene) - Rat Genome Database

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Gene: RNU6-554P (RNA, U6 small nuclear 554, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-554P
Name: RNA, U6 small nuclear 554, pseudogene
RGD ID: 10412449
HGNC Page HGNC:47517
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,602,543 - 43,602,648 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,602,543 - 43,602,648 (+)EnsemblGRCh38hg38GRCh38
GRCh371543,894,741 - 43,894,846 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q15.3NCBI
CHM1_11544,012,785 - 44,012,890 (+)NCBICHM1_1
T2T-CHM13v2.01541,409,902 - 41,410,007 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-554P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381543,602,543 - 43,602,648 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1543,602,543 - 43,602,648 (+)EnsemblGRCh38hg38GRCh38
GRCh371543,894,741 - 43,894,846 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q15.3NCBI
CHM1_11544,012,785 - 44,012,890 (+)NCBICHM1_1
T2T-CHM13v2.01541,409,902 - 41,410,007 (+)NCBIT2T-CHM13v2.0
Gm23337
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39345,933,023 - 45,933,130 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl345,933,013 - 45,933,130 (+)EnsemblGRCm39 Ensembl
GRCm38345,978,588 - 45,978,695 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl345,978,578 - 45,978,695 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map3BNCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:252
Count of miRNA genes:235
Interacting mature miRNAs:239
Transcripts:ENST00000410466
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 62
Low 109 20 73 25 64 7 210 8 846 20 209 110 19 6 87 2
Below cutoff 192 27 98 43 50 8 294 39 688 19 171 47 37 23 157

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000410466
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1543,602,543 - 43,602,648 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-554P COSMIC
Ensembl Genes ENSG00000222398 Ensembl, ENTREZGENE
GTEx ENSG00000222398 GTEx
HGNC ID HGNC:47517 ENTREZGENE
Human Proteome Map RNU6-554P Human Proteome Map
NCBI Gene RNU6-554P ENTREZGENE