RNU6-642P (RNA, U6 small nuclear 642, pseudogene) - Rat Genome Database

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Gene: RNU6-642P (RNA, U6 small nuclear 642, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-642P
Name: RNA, U6 small nuclear 642, pseudogene
RGD ID: 10412381
HGNC Page HGNC:47605
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,916,184 - 218,916,287 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,916,184 - 218,916,287 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,780,906 - 219,781,009 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q35NCBI
T2T-CHM13v2.02219,404,554 - 219,404,657 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-642P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,916,184 - 218,916,287 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,916,184 - 218,916,287 (-)EnsemblGRCh38hg38GRCh38
GRCh372219,780,906 - 219,781,009 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q35NCBI
T2T-CHM13v2.02219,404,554 - 219,404,657 (-)NCBIT2T-CHM13v2.0
LOC119866647
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2834,779,643 - 34,779,745 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02835,277,062 - 35,277,167 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2835,277,062 - 35,277,167 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12834,832,182 - 34,832,284 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02834,824,285 - 34,824,387 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02835,083,735 - 35,083,837 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:184
Interacting mature miRNAs:188
Transcripts:ENST00000363159
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 43 11 22 12 156 11 75 20 32 13 59 72 4 1 17
Below cutoff 51 47 24 2 21 1 77 65 83 9 58 27 1 9 50

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000363159
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2218,916,184 - 218,916,287 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-642P COSMIC
Ensembl Genes ENSG00000200029 Ensembl, ENTREZGENE
GTEx ENSG00000200029 GTEx
HGNC ID HGNC:47605 ENTREZGENE
Human Proteome Map RNU6-642P Human Proteome Map
NCBI Gene RNU6-642P ENTREZGENE