RNU6-1217P (RNA, U6 small nuclear 1217, pseudogene) - Rat Genome Database

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Gene: RNU6-1217P (RNA, U6 small nuclear 1217, pseudogene) Homo sapiens
Analyze
No known orthologs.
Symbol: RNU6-1217P
Name: RNA, U6 small nuclear 1217, pseudogene
RGD ID: 10412373
HGNC Page HGNC:48180
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384119,434,005 - 119,434,108 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4119,434,005 - 119,434,108 (-)EnsemblGRCh38hg38GRCh38
GRCh374120,355,160 - 120,355,263 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map4q26NCBI
CHM1_14120,331,775 - 120,331,878 (-)NCBICHM1_1
T2T-CHM13v2.04122,739,122 - 122,739,225 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:80
Interacting mature miRNAs:82
Transcripts:ENST00000411276
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 6 7 21 7 13 6 24 2 12 6 17 40 1 3 9
Below cutoff 28 26 27 13 19 10 48 29 52 12 18 24 3 4 34 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000411276
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4119,434,005 - 119,434,108 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1217P COSMIC
Ensembl Genes ENSG00000223208 Ensembl, ENTREZGENE
GTEx ENSG00000223208 GTEx
HGNC ID HGNC:48180 ENTREZGENE
Human Proteome Map RNU6-1217P Human Proteome Map
NCBI Gene RNU6-1217P ENTREZGENE