RNU6-315P (RNA, U6 small nuclear 315, pseudogene) - Rat Genome Database

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Gene: RNU6-315P (RNA, U6 small nuclear 315, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-315P
Name: RNA, U6 small nuclear 315, pseudogene
RGD ID: 10400759
HGNC Page HGNC:47278
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383170,149,845 - 170,149,951 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3170,149,845 - 170,149,951 (+)EnsemblGRCh38hg38GRCh38
GRCh373169,867,633 - 169,867,739 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q26.2NCBI
CHM1_13169,831,028 - 169,831,134 (+)NCBICHM1_1
T2T-CHM13v2.03172,934,519 - 172,934,625 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-315P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383170,149,845 - 170,149,951 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3170,149,845 - 170,149,951 (+)EnsemblGRCh38hg38GRCh38
GRCh373169,867,633 - 169,867,739 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q26.2NCBI
CHM1_13169,831,028 - 169,831,134 (+)NCBICHM1_1
T2T-CHM13v2.03172,934,519 - 172,934,625 (+)NCBIT2T-CHM13v2.0
Gm23390
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,030,509 - 91,030,612 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,030,507 - 91,030,612 (+)EnsemblGRCm39 Ensembl
GRCm38291,200,164 - 91,200,267 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,200,162 - 91,200,267 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2E1NCBI
LOC120101973
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,629,221 - 97,629,326 (+)NCBIGRCr8
mRatBN7.2377,173,411 - 77,173,516 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl377,173,411 - 77,173,516 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl380,018,735 - 80,018,840 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map3q24NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:56
Interacting mature miRNAs:56
Transcripts:ENST00000362666
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 23 1 2
Low 170 175 184 78 308 64 362 70 172 76 225 285 18 75 190 1
Below cutoff 265 301 181 46 213 23 465 174 252 37 169 157 24 154 272 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000362666
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3170,149,845 - 170,149,951 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-315P COSMIC
Ensembl Genes ENSG00000199536 Ensembl, ENTREZGENE
GTEx ENSG00000199536 GTEx
HGNC ID HGNC:47278 ENTREZGENE
Human Proteome Map RNU6-315P Human Proteome Map
NCBI Gene RNU6-315P ENTREZGENE