RNU6-641P (RNA, U6 small nuclear 641, pseudogene) - Rat Genome Database

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Gene: RNU6-641P (RNA, U6 small nuclear 641, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-641P
Name: RNA, U6 small nuclear 641, pseudogene
RGD ID: 10400745
HGNC Page HGNC:47604
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X36,021,940 - 36,022,045 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX36,021,939 - 36,022,045 (-)EnsemblGRCh38hg38GRCh38
GRCh37X36,040,057 - 36,040,162 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXp21.1NCBI
CHM1_1X36,071,148 - 36,071,253 (-)NCBICHM1_1
T2T-CHM13v2.0X35,617,715 - 35,617,820 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-641P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X36,021,940 - 36,022,045 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX36,021,939 - 36,022,045 (-)EnsemblGRCh38hg38GRCh38
GRCh37X36,040,057 - 36,040,162 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXp21.1NCBI
CHM1_1X36,071,148 - 36,071,253 (-)NCBICHM1_1
T2T-CHM13v2.0X35,617,715 - 35,617,820 (-)NCBIT2T-CHM13v2.0
Rnu6-641
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8362,073,699 - 62,073,805 (-)NCBIGRCr8
mRatBN7.2341,664,805 - 41,664,911 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl341,664,805 - 41,664,911 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map3q21NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:84
Count of miRNA genes:80
Interacting mature miRNAs:82
Transcripts:ENST00000384006
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system integumental system nervous system reproductive system respiratory system appendage
High
Medium
Low 1 1 5 1 4 1
Below cutoff 2 2 2 1 7 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384006
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX36,021,939 - 36,022,045 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-641P COSMIC
Ensembl Genes ENSG00000206733 Ensembl, ENTREZGENE
GTEx ENSG00000206733 GTEx
HGNC ID HGNC:47604 ENTREZGENE
Human Proteome Map RNU6-641P Human Proteome Map
NCBI Gene RNU6-641P ENTREZGENE