CRIP1P3 (cysteine rich protein 1 pseudogene 3) - Rat Genome Database

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Gene: CRIP1P3 (cysteine rich protein 1 pseudogene 3) Homo sapiens
Analyze
Symbol: CRIP1P3
Name: cysteine rich protein 1 pseudogene 3
RGD ID: 10400660
HGNC Page HGNC:44518
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CRIP1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381202,096,759 - 202,096,978 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1202,096,759 - 202,096,978 (+)EnsemblGRCh38hg38GRCh38
GRCh371202,065,887 - 202,066,106 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q32.1NCBI
CHM1_11203,488,149 - 203,488,368 (+)NCBICHM1_1
T2T-CHM13v2.01201,354,303 - 201,354,522 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:264
Count of miRNA genes:255
Interacting mature miRNAs:262
Transcripts:ENST00000416794
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 15 1 6 4 7 4 10 18 3 25 12 8
Below cutoff 166 136 35 10 59 10 225 95 222 8 88 59 1 21 186 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000416794
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1202,096,759 - 202,096,978 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CRIP1P3 COSMIC
Ensembl Genes ENSG00000227109 Ensembl, ENTREZGENE
GTEx ENSG00000227109 GTEx
HGNC ID HGNC:44518 ENTREZGENE
Human Proteome Map CRIP1P3 Human Proteome Map
NCBI Gene CRIP1P3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-02 CRIP1P3  cysteine rich protein 1 pseudogene 3    cysteine-rich protein 1 (intestinal) pseudogene 3  Symbol and/or name change 5135510 APPROVED