AKIRIN1P2 (akirin 1 pseudogene 2) - Rat Genome Database

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Gene: AKIRIN1P2 (akirin 1 pseudogene 2) Homo sapiens
Analyze
Symbol: AKIRIN1P2
Name: akirin 1 pseudogene 2
RGD ID: 10400468
HGNC Page HGNC:50797
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: AKIRIN1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X68,132,780 - 68,133,634 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX68,132,868 - 68,133,437 (+)EnsemblGRCh38hg38GRCh38
GRCh37X67,352,622 - 67,353,476 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq12NCBI
CHM1_1X67,245,149 - 67,245,718 (+)NCBICHM1_1
T2T-CHM13v2.0X66,565,594 - 66,566,448 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:69
Interacting mature miRNAs:69
Transcripts:ENST00000440655
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 5 5 5 1 195 1 25 1 19 10 32 10 3 16 1
Below cutoff 297 307 209 61 151 22 762 241 555 54 349 276 39 178 478

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000440655
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX68,132,868 - 68,133,437 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AKIRIN1P2 COSMIC
Ensembl Genes ENSG00000228125 Ensembl
GTEx ENSG00000228125 GTEx
HGNC ID HGNC:50797 ENTREZGENE
Human Proteome Map AKIRIN1P2 Human Proteome Map
NCBI Gene AKIRIN1P2 ENTREZGENE