RNU6-206P (RNA, U6 small nuclear 206, pseudogene) - Rat Genome Database

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Gene: RNU6-206P (RNA, U6 small nuclear 206, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-206P
Name: RNA, U6 small nuclear 206, pseudogene
RGD ID: 10400326
HGNC Page HGNC:47169
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387139,315,291 - 139,315,394 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7139,315,291 - 139,315,394 (-)EnsemblGRCh38hg38GRCh38
GRCh377139,000,037 - 139,000,140 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q34NCBI
CHM1_17138,933,783 - 138,933,886 (-)NCBICHM1_1
T2T-CHM13v2.07140,628,578 - 140,628,681 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-206P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387139,315,291 - 139,315,394 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7139,315,291 - 139,315,394 (-)EnsemblGRCh38hg38GRCh38
GRCh377139,000,037 - 139,000,140 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q34NCBI
CHM1_17138,933,783 - 138,933,886 (-)NCBICHM1_1
T2T-CHM13v2.07140,628,578 - 140,628,681 (-)NCBIT2T-CHM13v2.0
Gm24356
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39727,822,679 - 27,822,784 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl727,822,679 - 27,822,784 (+)EnsemblGRCm39 Ensembl
GRCm38728,123,254 - 28,123,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,123,254 - 28,123,359 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map7A3NCBI
Rnu6-105
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,545,767 - 92,545,866 (+)NCBIGRCr8
mRatBN7.2183,418,191 - 83,418,290 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,418,191 - 83,418,290 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl183,418,191 - 83,418,290 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl185,051,944 - 85,052,044 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q21NCBI
LOC119869664
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1641,607,090 - 41,607,197 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01643,156,378 - 43,156,485 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1643,156,378 - 43,156,485 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11641,249,170 - 41,249,277 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01641,793,051 - 41,793,158 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01641,987,735 - 41,987,842 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:289
Count of miRNA genes:278
Interacting mature miRNAs:288
Transcripts:ENST00000384116
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 4 1 5 1 4 1 5 4 4 6 2
Below cutoff 8 5 6 5 2 4 13 4 17 5 12 6 2 4 7

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384116
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7139,315,291 - 139,315,394 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-206P COSMIC
Ensembl Genes ENSG00000206843 Ensembl, ENTREZGENE
GTEx ENSG00000206843 GTEx
HGNC ID HGNC:47169 ENTREZGENE
Human Proteome Map RNU6-206P Human Proteome Map
NCBI Gene RNU6-206P ENTREZGENE