RN7SL649P (RNA, 7SL, cytoplasmic 649, pseudogene) - Rat Genome Database

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Gene: RN7SL649P (RNA, 7SL, cytoplasmic 649, pseudogene) Homo sapiens
Analyze
Symbol: RN7SL649P
Name: RNA, 7SL, cytoplasmic 649, pseudogene
RGD ID: 10400272
HGNC Page HGNC:46665
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Related Functional Gene: RN7SL1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38112,036,740 - 12,037,014 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl112,036,740 - 12,037,014 (-)EnsemblGRCh38hg38GRCh38
GRCh37112,096,797 - 12,097,071 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p36.22NCBI
CHM1_1112,084,550 - 12,084,824 (-)NCBICHM1_1
T2T-CHM13v2.0111,580,884 - 11,581,158 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:209
Count of miRNA genes:202
Interacting mature miRNAs:208
Transcripts:ENST00000496974
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 4 3 28 5 2 6 14 2 1 1
Below cutoff 65 98 35 11 94 9 100 48 109 5 61 37 3 38 47

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000496974
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl112,036,740 - 12,037,014 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SL649P COSMIC
Ensembl Genes ENSG00000243539 Ensembl, ENTREZGENE
GTEx ENSG00000243539 GTEx
HGNC ID HGNC:46665 ENTREZGENE
Human Proteome Map RN7SL649P Human Proteome Map
NCBI Gene RN7SL649P ENTREZGENE