RNU6-647P (RNA, U6 small nuclear 647, pseudogene) - Rat Genome Database

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Gene: RNU6-647P (RNA, U6 small nuclear 647, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-647P
Name: RNA, U6 small nuclear 647, pseudogene
RGD ID: 10400227
HGNC Page HGNC:47610
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38232,214,456 - 32,214,562 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl232,214,456 - 32,214,562 (-)EnsemblGRCh38hg38GRCh38
GRCh37232,439,525 - 32,439,631 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p22.3NCBI
CHM1_1232,369,423 - 32,369,529 (-)NCBICHM1_1
T2T-CHM13v2.0232,262,977 - 32,263,083 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-647P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38232,214,456 - 32,214,562 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl232,214,456 - 32,214,562 (-)EnsemblGRCh38hg38GRCh38
GRCh37232,439,525 - 32,439,631 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p22.3NCBI
CHM1_1232,369,423 - 32,369,529 (-)NCBICHM1_1
T2T-CHM13v2.0232,262,977 - 32,263,083 (-)NCBIT2T-CHM13v2.0
LOC119873178
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha83,150,433 - 3,150,536 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,309,773 - 3,309,876 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,309,773 - 3,309,876 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,001,151 - 3,001,254 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,062,950 - 3,063,053 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,324,909 - 3,325,012 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:35
Interacting mature miRNAs:35
Transcripts:ENST00000364243
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2
Low 43 27 38 16 114 15 110 7 46 19 57 39 2 16 45 1
Below cutoff 63 51 52 14 31 7 145 40 69 9 51 40 8 49 74

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000364243
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl232,214,456 - 32,214,562 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-647P COSMIC
Ensembl Genes ENSG00000201113 Ensembl, ENTREZGENE
GTEx ENSG00000201113 GTEx
HGNC ID HGNC:47610 ENTREZGENE
Human Proteome Map RNU6-647P Human Proteome Map
NCBI Gene RNU6-647P ENTREZGENE