RNU6-352P (RNA, U6 small nuclear 352, pseudogene) - Rat Genome Database

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Gene: RNU6-352P (RNA, U6 small nuclear 352, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-352P
Name: RNA, U6 small nuclear 352, pseudogene
RGD ID: 10400140
HGNC Page HGNC:47315
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381101,859,851 - 101,859,957 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1101,859,851 - 101,859,957 (+)EnsemblGRCh38hg38GRCh38
GRCh371102,325,407 - 102,325,513 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p21.1NCBI
CHM1_11102,440,744 - 102,440,850 (+)NCBICHM1_1
T2T-CHM13v2.01101,709,042 - 101,709,148 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-352P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381101,859,851 - 101,859,957 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1101,859,851 - 101,859,957 (+)EnsemblGRCh38hg38GRCh38
GRCh371102,325,407 - 102,325,513 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p21.1NCBI
CHM1_11102,440,744 - 102,440,850 (+)NCBICHM1_1
T2T-CHM13v2.01101,709,042 - 101,709,148 (+)NCBIT2T-CHM13v2.0
Gm25269
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,492,673 - 188,492,776 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,492,673 - 188,492,776 (+)EnsemblGRCm39 Ensembl
GRCm381188,760,476 - 188,760,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,760,476 - 188,760,579 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1H6NCBI
LOC120096466
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813102,839,265 - 102,839,368 (+)NCBIGRCr8
mRatBN7.213100,307,962 - 100,308,065 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13100,307,962 - 100,308,065 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl13107,231,952 - 107,232,028 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map13q26NCBI
LOC119871689
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha436,930,692 - 36,930,797 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0437,330,775 - 37,330,880 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl437,330,775 - 37,330,880 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1437,156,059 - 37,156,164 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0437,343,703 - 37,343,808 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0437,852,726 - 37,852,831 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:190
Count of miRNA genes:167
Interacting mature miRNAs:170
Transcripts:ENST00000516908
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 1 2 1 1 12 1 2 1
Below cutoff 4 1 3 3 3 1 15 1 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516908
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1101,859,851 - 101,859,957 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-352P COSMIC
Ensembl Genes ENSG00000252717 Ensembl, ENTREZGENE
GTEx ENSG00000252717 GTEx
HGNC ID HGNC:47315 ENTREZGENE
Human Proteome Map RNU6-352P Human Proteome Map
NCBI Gene RNU6-352P ENTREZGENE