RNU6-995P (RNA, U6 small nuclear 995, pseudogene) - Rat Genome Database

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Gene: RNU6-995P (RNA, U6 small nuclear 995, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-995P
Name: RNA, U6 small nuclear 995, pseudogene
RGD ID: 10400024
HGNC Page HGNC:47958
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X80,936,434 - 80,936,540 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX80,936,434 - 80,936,540 (+)EnsemblGRCh38hg38GRCh38
GRCh37X80,191,933 - 80,192,039 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq21.1NCBI
CHM1_1X80,085,364 - 80,085,470 (+)NCBICHM1_1
T2T-CHM13v2.0X79,370,210 - 79,370,316 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-995P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X80,936,434 - 80,936,540 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX80,936,434 - 80,936,540 (+)EnsemblGRCh38hg38GRCh38
GRCh37X80,191,933 - 80,192,039 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq21.1NCBI
CHM1_1X80,085,364 - 80,085,470 (+)NCBICHM1_1
T2T-CHM13v2.0X79,370,210 - 79,370,316 (+)NCBIT2T-CHM13v2.0
Gm25494
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,780,774 - 128,780,873 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,780,774 - 128,780,873 (+)EnsemblGRCm39 Ensembl
GRCm3810128,944,905 - 128,945,004 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,944,905 - 128,945,004 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map10D3NCBI
LOC120094425
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88104,086,396 - 104,086,495 (+)NCBIGRCr8
mRatBN7.2895,206,759 - 95,206,858 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl895,206,759 - 95,206,858 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl895,206,759 - 95,206,858 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl8102,277,728 - 102,277,827 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map8q31NCBI
LOC119864839
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2041,343,823 - 41,343,920 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02041,910,320 - 41,910,417 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2041,910,320 - 41,910,417 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12041,152,325 - 41,152,422 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02041,553,497 - 41,553,594 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02041,834,074 - 41,834,171 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:192
Count of miRNA genes:180
Interacting mature miRNAs:185
Transcripts:ENST00000391244
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 4 5 1 2
Below cutoff 3 2 2 2 4 2 6 2 1 1 2 3 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000391244
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX80,936,434 - 80,936,540 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-995P COSMIC
Ensembl Genes ENSG00000212546 Ensembl, ENTREZGENE
GTEx ENSG00000212546 GTEx
HGNC ID HGNC:47958 ENTREZGENE
Human Proteome Map RNU6-995P Human Proteome Map
NCBI Gene RNU6-995P ENTREZGENE