RNU6-1067P (RNA, U6 small nuclear 1067, pseudogene)

Gene: RNU6-1067P (RNA, U6 small nuclear 1067, pseudogene) Homo sapiens

Analyze

Symbol:

RNU6-1067P

Name:

RNA, U6 small nuclear 1067, pseudogene

RGD ID:

10399942

HGNC Page

HGNC:48030

Description:

Type:

pseudo (Ensembl: snRNA)

RefSeq Status:

INFERRED

RGD Orthologs

Mouse

Rat

Alliance Orthologs

More Info

more info ...

Related Functional Gene:

RNU6-1

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	28,667,919 - 28,668,025 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	28,667,919 - 28,668,025 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	28,956,848 - 28,956,954 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	10	p12.1	NCBI
CHM1_1	10	28,957,287 - 28,957,393 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	28,699,299 - 28,699,405 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Comparative Map Data

RNU6-1067P
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	28,667,919 - 28,668,025 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	28,667,919 - 28,668,025 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	28,956,848 - 28,956,954 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	10	p12.1	NCBI
CHM1_1	10	28,957,287 - 28,957,393 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	28,699,299 - 28,699,405 (+)	NCBI		T2T-CHM13v2.0

Gm23947
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	88,700,254 - 88,700,360 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	88,700,254 - 88,700,360 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	88,392,826 - 88,392,932 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	88,392,826 - 88,392,932 (-)	Ensembl	GRCm38		mm10	GRCm38
Cytogenetic Map	17	E4	NCBI

LOC120096092
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	49,599,307 - 49,599,413 (+)	NCBI		GRCr8
mRatBN7.2	12	43,938,872 - 43,938,978 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	43,938,872 - 43,938,978 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0 Ensembl	12	49,964,940 - 49,965,046 (+)	NCBI	Rnor6.0		rn6	Rnor6.0
Cytogenetic Map	12	q16	NCBI

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	207
Count of miRNA genes:	199
Interacting mature miRNAs:	207
Transcripts:	ENST00000384752
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	adipose tissue	appendage
High
Medium										1	1
Low	4	7	9	5	15	5	23	6	6	11	24	17	1	8
Below cutoff	18	14	6	2	14	2	10	15	22	1	15	6	3	5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NG_043781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AL161936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000384752

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	10	28,667,919 - 28,668,025 (+)	Ensembl

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	RNU6-1067P	COSMIC
Ensembl Genes	ENSG00000207483	Ensembl, ENTREZGENE
GTEx	ENSG00000207483	GTEx
HGNC ID	HGNC:48030	ENTREZGENE
Human Proteome Map	RNU6-1067P	Human Proteome Map
NCBI Gene	RNU6-1067P	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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