PIGPP4 (phosphatidylinositol glycan anchor biosynthesis class P pseudogene 4) - Rat Genome Database

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Gene: PIGPP4 (phosphatidylinositol glycan anchor biosynthesis class P pseudogene 4) Homo sapiens
Analyze
Symbol: PIGPP4
Name: phosphatidylinositol glycan anchor biosynthesis class P pseudogene 4
RGD ID: 10399761
HGNC Page HGNC:45156
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: PIGP  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38189,880,578 - 9,880,869 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl189,880,580 - 9,880,886 (-)EnsemblGRCh38hg38GRCh38
GRCh37189,880,575 - 9,880,866 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map18p11.22NCBI
CHM1_1189,879,844 - 9,880,150 (-)NCBICHM1_1
T2T-CHM13v2.01810,044,046 - 10,044,337 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:284
Count of miRNA genes:271
Interacting mature miRNAs:282
Transcripts:ENST00000584447
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 1 1 2 2 2 1 11 4 1 1
Below cutoff 24 32 13 42 27 10 26 5 70 20 8 19

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000584447
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl189,880,580 - 9,880,886 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PIGPP4 COSMIC
Ensembl Genes ENSG00000265564 Ensembl, ENTREZGENE
GTEx ENSG00000265564 GTEx
HGNC ID HGNC:45156 ENTREZGENE
Human Proteome Map PIGPP4 Human Proteome Map
NCBI Gene PIGPP4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-10 PIGPP4  phosphatidylinositol glycan anchor biosynthesis class P pseudogene 4    phosphatidylinositol glycan anchor biosynthesis, class P pseudogene 4  Symbol and/or name change 5135510 APPROVED