RNU6-435P (RNA, U6 small nuclear 435, pseudogene) - Rat Genome Database

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Gene: RNU6-435P (RNA, U6 small nuclear 435, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-435P
Name: RNA, U6 small nuclear 435, pseudogene
RGD ID: 10399749
HGNC Page HGNC:47398
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381824,218,300 - 24,218,404 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1824,218,300 - 24,218,404 (+)EnsemblGRCh38hg38GRCh38
GRCh371821,798,264 - 21,798,368 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map18q11.2NCBI
CHM1_11821,725,514 - 21,725,618 (+)NCBICHM1_1
T2T-CHM13v2.01824,412,622 - 24,412,726 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-435P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381824,218,300 - 24,218,404 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1824,218,300 - 24,218,404 (+)EnsemblGRCh38hg38GRCh38
GRCh371821,798,264 - 21,798,368 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map18q11.2NCBI
CHM1_11821,725,514 - 21,725,618 (+)NCBICHM1_1
T2T-CHM13v2.01824,412,622 - 24,412,726 (+)NCBIT2T-CHM13v2.0
LOC120100140
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8167,418,133 - 67,418,239 (-)NCBIGRCr8
mRatBN7.2158,745,086 - 58,745,192 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl158,745,086 - 58,745,192 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl159,770,116 - 59,770,222 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1q12NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:198
Count of miRNA genes:189
Interacting mature miRNAs:197
Transcripts:ENST00000384039
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 19 12 15 5 4 5 45 6 23 9 21 19 6 19
Below cutoff 30 20 13 5 7 1 49 22 42 10 26 17 4 19 26 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384039
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1824,218,300 - 24,218,404 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-435P COSMIC
Ensembl Genes ENSG00000206766 Ensembl, ENTREZGENE
GTEx ENSG00000206766 GTEx
HGNC ID HGNC:47398 ENTREZGENE
Human Proteome Map RNU6-435P Human Proteome Map
NCBI Gene RNU6-435P ENTREZGENE