RNU6-27P (RNA, U6 small nuclear 27, pseudogene) - Rat Genome Database

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Gene: RNU6-27P (RNA, U6 small nuclear 27, pseudogene) Homo sapiens
Analyze
No known orthologs.
Symbol: RNU6-27P
Name: RNA, U6 small nuclear 27, pseudogene
RGD ID: 10399657
HGNC Page HGNC:34271
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Previously known as: RNU6-27
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382017,187,510 - 17,187,615 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2017,187,510 - 17,187,616 (+)EnsemblGRCh38hg38GRCh38
GRCh372017,168,155 - 17,168,260 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map20p12.1NCBI
CHM1_12017,168,175 - 17,168,280 (+)NCBICHM1_1
T2T-CHM13v2.02017,238,172 - 17,238,277 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:169
Count of miRNA genes:150
Interacting mature miRNAs:154
Transcripts:ENST00000516146
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 10 14 4 2 17 1 8 5 9 2 12 5 1 5
Below cutoff 24 26 16 1 17 2 29 21 34 8 38 19 7 19

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516146
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2017,187,510 - 17,187,616 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-27P COSMIC
Ensembl Genes ENSG00000251955 Ensembl, ENTREZGENE
GTEx ENSG00000251955 GTEx
HGNC ID HGNC:34271 ENTREZGENE
Human Proteome Map RNU6-27P Human Proteome Map
NCBI Gene RNU6-27P ENTREZGENE