RNU6-871P (RNA, U6 small nuclear 871, pseudogene) - Rat Genome Database

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Gene: RNU6-871P (RNA, U6 small nuclear 871, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-871P
Name: RNA, U6 small nuclear 871, pseudogene
RGD ID: 10399590
HGNC Page HGNC:47834
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381259,450,673 - 59,450,772 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1259,450,673 - 59,450,772 (-)EnsemblGRCh38hg38GRCh38
GRCh371259,844,454 - 59,844,553 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q14.1NCBI
CHM1_11259,812,634 - 59,812,733 (-)NCBICHM1_1
T2T-CHM13v2.01259,437,933 - 59,438,032 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-871P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381259,450,673 - 59,450,772 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1259,450,673 - 59,450,772 (-)EnsemblGRCh38hg38GRCh38
GRCh371259,844,454 - 59,844,553 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q14.1NCBI
CHM1_11259,812,634 - 59,812,733 (-)NCBICHM1_1
T2T-CHM13v2.01259,437,933 - 59,438,032 (-)NCBIT2T-CHM13v2.0
Gm26017
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39486,427,361 - 86,427,462 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl486,427,389 - 86,427,462 (+)EnsemblGRCm39 Ensembl
GRCm38486,509,124 - 86,509,225 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl486,509,152 - 86,509,225 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4C4NCBI
LOC120093308
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86118,298,309 - 118,298,413 (-)NCBIGRCr8
mRatBN7.26112,567,734 - 112,567,838 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6112,567,734 - 112,567,838 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl6117,286,838 - 117,286,942 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map6q31NCBI
LOC119864830
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha205,344,442 - 5,344,548 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0205,330,940 - 5,331,046 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl205,330,940 - 5,331,046 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1205,046,878 - 5,046,984 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0205,399,794 - 5,399,900 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0205,381,308 - 5,381,414 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:55
Interacting mature miRNAs:55
Transcripts:ENST00000516122
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 4 4 3 13 3 97 49 7 12 3 2
Below cutoff 7 1 1 2 109 2 16 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516122
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1259,450,673 - 59,450,772 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-871P COSMIC
Ensembl Genes ENSG00000251931 Ensembl, ENTREZGENE
GTEx ENSG00000251931 GTEx
HGNC ID HGNC:47834 ENTREZGENE
Human Proteome Map RNU6-871P Human Proteome Map
NCBI Gene RNU6-871P ENTREZGENE