RN7SL440P (RNA, 7SL, cytoplasmic 440, pseudogene) - Rat Genome Database

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Gene: RN7SL440P (RNA, 7SL, cytoplasmic 440, pseudogene) Homo sapiens
Analyze
Symbol: RN7SL440P
Name: RNA, 7SL, cytoplasmic 440, pseudogene
RGD ID: 10399532
HGNC Page HGNC:46456
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Related Functional Gene: RN7SL1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38194,150,738 - 94,151,080 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl194,150,738 - 94,151,080 (+)EnsemblGRCh38hg38GRCh38
GRCh37194,616,294 - 94,616,636 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p22.1NCBI
CHM1_1194,731,268 - 94,731,593 (+)NCBICHM1_1
T2T-CHM13v2.0193,998,937 - 93,999,279 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:196
Count of miRNA genes:190
Interacting mature miRNAs:195
Transcripts:ENST00000577855
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 1
Low 84 8 62 34 148 35 133 26 66 95 111 187 5 1 3 3
Below cutoff 175 155 156 46 121 38 353 103 265 70 142 244 13 90 166 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000577855
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl194,150,738 - 94,151,080 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SL440P COSMIC
Ensembl Genes ENSG00000264963 Ensembl, ENTREZGENE
GTEx ENSG00000264963 GTEx
HGNC ID HGNC:46456 ENTREZGENE
Human Proteome Map RN7SL440P Human Proteome Map
NCBI Gene RN7SL440P ENTREZGENE