RNU6-456P (RNA, U6 small nuclear 456, pseudogene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: RNU6-456P (RNA, U6 small nuclear 456, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-456P
Name: RNA, U6 small nuclear 456, pseudogene
RGD ID: 10399415
HGNC Page HGNC:47419
Description: ASSOCIATED WITH Familial Prostate Cancer
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385134,500,178 - 134,500,284 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5134,500,178 - 134,500,284 (-)EnsemblGRCh38hg38GRCh38
GRCh375133,835,869 - 133,835,975 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q31.1NCBI
CHM1_15133,268,501 - 133,268,607 (-)NCBICHM1_1
T2T-CHM13v2.05135,025,798 - 135,025,904 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
RNU6-456P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385134,500,178 - 134,500,284 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5134,500,178 - 134,500,284 (-)EnsemblGRCh38hg38GRCh38
GRCh375133,835,869 - 133,835,975 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q31.1NCBI
CHM1_15133,268,501 - 133,268,607 (-)NCBICHM1_1
T2T-CHM13v2.05135,025,798 - 135,025,904 (-)NCBIT2T-CHM13v2.0
Gm26449
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391214,928,500 - 14,928,599 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1214,928,496 - 14,928,599 (+)EnsemblGRCm39 Ensembl
GRCm381214,878,499 - 14,878,598 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1214,878,495 - 14,878,598 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12A1.1NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:108
Interacting mature miRNAs:111
Transcripts:ENST00000384493
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 9 5 7 1 7 13 6 8 1 8 13 1 1 10
Below cutoff 50 61 41 9 18 8 87 81 92 2 25 29 3 20 57

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384493
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,500,178 - 134,500,284 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-456P COSMIC
Ensembl Genes ENSG00000207222 Ensembl, ENTREZGENE
GTEx ENSG00000207222 GTEx
HGNC ID HGNC:47419 ENTREZGENE
Human Proteome Map RNU6-456P Human Proteome Map
NCBI Gene RNU6-456P ENTREZGENE