Gene: RNU6-1101P (RNA, U6 small nuclear 1101, pseudogene) Homo sapiens |
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Analyze |
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Symbol: |
RNU6-1101P |
Name: |
RNA, U6 small nuclear 1101, pseudogene |
RGD ID: |
10399319 |
HGNC Page |
HGNC:48064 |
Description: |
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Type: |
pseudo (Ensembl: snRNA)
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RefSeq Status: |
INFERRED |
RGD Orthologs |
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Alliance Orthologs |
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More Info |
more info ...
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More Info |
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Related Functional Gene: |
RNU6-1
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Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 3 | 194,533,503 - 194,533,583 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 3 | 194,533,503 - 194,533,583 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 3 | 194,254,232 - 194,254,312 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 3 | q29 | NCBI | | | | | CHM1_1 | 3 | 194,217,299 - 194,217,379 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 3 | 197,232,103 - 197,232,183 (-) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
RNU6-1101P (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 3 | 194,533,503 - 194,533,583 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 3 | 194,533,503 - 194,533,583 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 3 | 194,254,232 - 194,254,312 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 3 | q29 | NCBI | | | | | CHM1_1 | 3 | 194,217,299 - 194,217,379 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 3 | 197,232,103 - 197,232,183 (-) | NCBI | | T2T-CHM13v2.0 | | |
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LOC120102588 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 4 | 154,238,090 - 154,238,177 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 4 | 152,565,797 - 152,565,884 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 4 | 152,565,797 - 152,565,884 (-) | Ensembl | | mRatBN7.2 Ensembl | | | mRatBN7.2 Ensembl | 4 | 152,565,797 - 152,565,884 (-) | NCBI | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 4 | 151,456,949 - 151,457,032 (-) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 4 | q42 | NCBI | | | | |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 40 | Count of miRNA genes: | 40 | Interacting mature miRNAs: | 40 | Transcripts: | ENST00000516244 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
appendage |
entire extraembryonic component |
High |
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Medium |
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Low |
4
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3
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7
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2
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9
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2
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4
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2
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3
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24
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6
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8
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2
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Below cutoff |
8
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1
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1
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7
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2
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5
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5
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5
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4
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6
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1
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Sequence
RefSeq Acc Id: |
ENST00000516244 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 3 | 194,533,503 - 194,533,583 (-) | Ensembl |
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Additional Information
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