RNU6-1047P (RNA, U6 small nuclear 1047, pseudogene) - Rat Genome Database

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Gene: RNU6-1047P (RNA, U6 small nuclear 1047, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1047P
Name: RNA, U6 small nuclear 1047, pseudogene
RGD ID: 10399293
HGNC Page HGNC:48010
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383127,240,968 - 127,241,074 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3127,240,968 - 127,241,074 (-)EnsemblGRCh38hg38GRCh38
GRCh373126,959,811 - 126,959,917 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q21.3NCBI
CHM1_13126,923,003 - 126,923,109 (-)NCBICHM1_1
T2T-CHM13v2.03129,973,442 - 129,973,548 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:204
Count of miRNA genes:199
Interacting mature miRNAs:204
Transcripts:ENST00000364418
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 2 2 5 4 1 1 2 2 2
Below cutoff 6 3 3 1 9 1 15 6 6 2 4 2 1 12

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000364418
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3127,240,968 - 127,241,074 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1047P COSMIC
Ensembl Genes ENSG00000201288 Ensembl, ENTREZGENE
GTEx ENSG00000201288 GTEx
HGNC ID HGNC:48010 ENTREZGENE
Human Proteome Map RNU6-1047P Human Proteome Map
NCBI Gene RNU6-1047P ENTREZGENE