RNU1-46P (RNA, U1 small nuclear 46, pseudogene) - Rat Genome Database

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Gene: RNU1-46P (RNA, U1 small nuclear 46, pseudogene) Homo sapiens
Analyze
Symbol: RNU1-46P
Name: RNA, U1 small nuclear 46, pseudogene
RGD ID: 10399241
HGNC Page HGNC:48388
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU1-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381851,283,733 - 51,283,890 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1851,283,733 - 51,283,896 (-)EnsemblGRCh38hg38GRCh38
GRCh371848,810,103 - 48,810,260 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map18q21.2NCBI
CHM1_11848,805,429 - 48,805,586 (-)NCBICHM1_1
T2T-CHM13v2.01851,485,494 - 51,485,651 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU1-46P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381851,283,733 - 51,283,890 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1851,283,733 - 51,283,896 (-)EnsemblGRCh38hg38GRCh38
GRCh371848,810,103 - 48,810,260 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map18q21.2NCBI
CHM1_11848,805,429 - 48,805,586 (-)NCBICHM1_1
T2T-CHM13v2.01851,485,494 - 51,485,651 (-)NCBIT2T-CHM13v2.0
Gm25589
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,113,440 - 29,113,605 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl629,113,440 - 29,113,605 (-)EnsemblGRCm39 Ensembl
GRCm38629,113,441 - 29,113,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,113,441 - 29,113,606 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map6A3.3NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:76
Interacting mature miRNAs:78
Transcripts:ENST00000384425
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 3 1 1 4 1 6 4 3 2 4
Below cutoff 5 9 2 1 8 1 13 4 24 2 7 5 1 5 11

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384425
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1851,283,733 - 51,283,896 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU1-46P COSMIC
Ensembl Genes ENSG00000207154 Ensembl, ENTREZGENE
GTEx ENSG00000207154 GTEx
HGNC ID HGNC:48388 ENTREZGENE
Human Proteome Map RNU1-46P Human Proteome Map
NCBI Gene RNU1-46P ENTREZGENE