RNU6-1296P (RNA, U6 small nuclear 1296, pseudogene) - Rat Genome Database

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Gene: RNU6-1296P (RNA, U6 small nuclear 1296, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1296P
Name: RNA, U6 small nuclear 1296, pseudogene
RGD ID: 10399235
HGNC Page HGNC:48259
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38551,167,541 - 51,167,647 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl551,167,541 - 51,167,647 (-)EnsemblGRCh38hg38GRCh38
GRCh37550,463,375 - 50,463,481 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q11.1NCBI
CHM1_1550,466,370 - 50,466,476 (-)NCBICHM1_1
T2T-CHM13v2.0551,986,734 - 51,986,840 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-1296P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38551,167,541 - 51,167,647 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl551,167,541 - 51,167,647 (-)EnsemblGRCh38hg38GRCh38
GRCh37550,463,375 - 50,463,481 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q11.1NCBI
CHM1_1550,466,370 - 50,466,476 (-)NCBICHM1_1
T2T-CHM13v2.0551,986,734 - 51,986,840 (-)NCBIT2T-CHM13v2.0
LOC119865276
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2212,047,267 - 12,047,373 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02212,282,793 - 12,282,899 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2212,282,793 - 12,282,899 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12211,981,891 - 11,981,997 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02212,027,345 - 12,027,451 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02212,044,281 - 12,044,387 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:154
Count of miRNA genes:150
Interacting mature miRNAs:153
Transcripts:ENST00000383879
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 6 1 1 2 2 1
Below cutoff 1 1 3 1 1 1 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000383879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl551,167,541 - 51,167,647 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1296P COSMIC
Ensembl Genes ENSG00000206606 Ensembl, ENTREZGENE
GTEx ENSG00000206606 GTEx
HGNC ID HGNC:48259 ENTREZGENE
Human Proteome Map RNU6-1296P Human Proteome Map
NCBI Gene RNU6-1296P ENTREZGENE