RNU6-886P (RNA, U6 small nuclear 886, pseudogene) - Rat Genome Database

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Gene: RNU6-886P (RNA, U6 small nuclear 886, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-886P
Name: RNA, U6 small nuclear 886, pseudogene
RGD ID: 10399187
HGNC Page HGNC:47849
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381437,434,469 - 37,434,573 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1437,434,469 - 37,434,573 (-)EnsemblGRCh38hg38GRCh38
GRCh371437,903,674 - 37,903,778 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q21.1NCBI
T2T-CHM13v2.01431,623,540 - 31,623,644 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-886P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381437,434,469 - 37,434,573 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1437,434,469 - 37,434,573 (-)EnsemblGRCh38hg38GRCh38
GRCh371437,903,674 - 37,903,778 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q21.1NCBI
T2T-CHM13v2.01431,623,540 - 31,623,644 (-)NCBIT2T-CHM13v2.0
Gm26138
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39457,877,389 - 57,877,495 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl457,877,389 - 57,877,495 (-)EnsemblGRCm39 Ensembl
GRCm38457,877,389 - 57,877,495 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl457,877,389 - 57,877,495 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map4B3NCBI
Rnu6-886
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8396,676,282 - 96,676,388 (+)NCBIGRCr8
mRatBN7.2376,220,415 - 76,220,521 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,220,415 - 76,220,521 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map3q24NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:41
Interacting mature miRNAs:41
Transcripts:ENST00000384319
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 52 64 58 23 10 20 151 24 76 23 99 75 6 21 87
Below cutoff 93 107 73 21 14 13 177 61 157 10 86 59 9 55 123

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384319
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1437,434,469 - 37,434,573 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-886P COSMIC
Ensembl Genes ENSG00000207046 Ensembl, ENTREZGENE
GTEx ENSG00000207046 GTEx
HGNC ID HGNC:47849 ENTREZGENE
Human Proteome Map RNU6-886P Human Proteome Map
NCBI Gene RNU6-886P ENTREZGENE