RNU2-65P (RNA, U2 small nuclear 65, pseudogene) - Rat Genome Database

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Gene: RNU2-65P (RNA, U2 small nuclear 65, pseudogene) Homo sapiens
Analyze
Symbol: RNU2-65P
Name: RNA, U2 small nuclear 65, pseudogene
RGD ID: 10399002
HGNC Page HGNC:48558
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU2-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381572,045,183 - 72,045,367 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1572,045,183 - 72,045,367 (+)EnsemblGRCh38hg38GRCh38
GRCh371572,337,524 - 72,337,708 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q23NCBI
CHM1_11572,455,547 - 72,455,730 (+)NCBICHM1_1
T2T-CHM13v2.01569,864,106 - 69,864,289 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU2-65P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381572,045,183 - 72,045,367 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1572,045,183 - 72,045,367 (+)EnsemblGRCh38hg38GRCh38
GRCh371572,337,524 - 72,337,708 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q23NCBI
CHM1_11572,455,547 - 72,455,730 (+)NCBICHM1_1
T2T-CHM13v2.01569,864,106 - 69,864,289 (+)NCBIT2T-CHM13v2.0
Gm25475
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911101,288,416 - 101,288,594 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11101,288,415 - 101,288,594 (-)EnsemblGRCm39 Ensembl
GRCm3811101,397,590 - 101,397,768 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,397,589 - 101,397,768 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11DNCBI
LOC120099528
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X126,027,480 - 126,027,583 (-)NCBIGRCr8
mRatBN7.2X121,161,958 - 121,162,061 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX121,161,958 - 121,162,061 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic MapXq35NCBI
LOC119866000
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2519,034,368 - 19,034,510 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02519,141,060 - 19,141,202 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2519,141,060 - 19,141,202 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12519,002,252 - 19,002,394 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02519,014,835 - 19,014,977 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02519,071,177 - 19,071,319 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:197
Count of miRNA genes:194
Interacting mature miRNAs:196
Transcripts:ENST00000410162
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 45 25 43 8 74 8 120 22 76 48 70 117 2 14 45 2
Below cutoff 194 184 157 32 134 24 461 208 285 68 168 207 13 97 284 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000410162
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1572,045,183 - 72,045,367 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU2-65P COSMIC
Ensembl Genes ENSG00000222094 Ensembl, ENTREZGENE
GTEx ENSG00000222094 GTEx
HGNC ID HGNC:48558 ENTREZGENE
Human Proteome Map RNU2-65P Human Proteome Map
NCBI Gene RNU2-65P ENTREZGENE