RNU6-1169P (RNA, U6 small nuclear 1169, pseudogene) - Rat Genome Database

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Gene: RNU6-1169P (RNA, U6 small nuclear 1169, pseudogene) Homo sapiens
Analyze
No known orthologs.
Symbol: RNU6-1169P
Name: RNA, U6 small nuclear 1169, pseudogene
RGD ID: 10398882
HGNC Page HGNC:48132
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381541,448,742 - 41,448,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1541,448,742 - 41,448,844 (-)EnsemblGRCh38hg38GRCh38
GRCh371541,740,940 - 41,741,042 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q15.1NCBI
T2T-CHM13v2.01539,254,905 - 39,255,007 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:211
Count of miRNA genes:204
Interacting mature miRNAs:209
Transcripts:ENST00000363537
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 20 22 26 6 75 6 86 5 34 13 40 39 1 11 33 1
Below cutoff 44 52 33 13 51 7 105 22 66 5 33 31 6 22 56

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000363537
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1541,448,742 - 41,448,844 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1169P COSMIC
Ensembl Genes ENSG00000200407 Ensembl, ENTREZGENE
GTEx ENSG00000200407 GTEx
HGNC ID HGNC:48132 ENTREZGENE
Human Proteome Map RNU6-1169P Human Proteome Map
NCBI Gene RNU6-1169P ENTREZGENE