Znf579 (zinc finger protein 579) - Rat Genome Database

Name: Znf579
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Znf579 (zinc finger protein 579) Chinchilla lanigera

Analyze

Symbol:

Znf579

Name:

zinc finger protein 579

RGD ID:

10089213

Description:

ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955567	761,535 - 762,351 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (ISO)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (ISO)

protein binding (ISO)

transcription cis-regulatory region binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Znf579
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955567	761,535 - 762,351 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF579
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	55,576,774 - 55,580,848 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	55,576,774 - 55,580,848 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	56,088,140 - 56,092,214 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	60,780,703 - 60,784,023 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	60,780,710 - 60,783,999	NCBI
Celera	19	53,130,028 - 53,133,351 (-)	NCBI		Celera
Cytogenetic Map	19	q13.42	NCBI
HuRef	19	52,399,884 - 52,403,207 (-)	NCBI		HuRef
CHM1_1	19	56,082,565 - 56,085,885 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	58,672,701 - 58,677,500 (-)	NCBI		T2T-CHM13v2.0

Zfp579
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	4,995,851 - 4,999,100 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	4,986,482 - 4,999,157 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	4,992,852 - 4,996,101 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	4,983,483 - 4,996,158 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	4,944,454 - 4,947,703 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	4,595,939 - 4,598,427 (-)	NCBI		MGSCv36	mm8
Celera	7	4,734,953 - 4,738,202 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	2.88	NCBI

Zfp579
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	77,876,367 - 77,879,591 (+)	NCBI		GRCr8
mRatBN7.2	1	68,847,547 - 68,850,751 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	68,847,500 - 68,850,751 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	74,192,664 - 74,195,836 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	82,756,971 - 82,760,143 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	75,905,849 - 75,909,021 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	72,397,887 - 72,402,329 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	72,399,157 - 72,402,327 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	76,133,748 - 76,136,944 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	67,586,226 - 67,589,398 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	67,664,393 - 67,667,506 (+)	NCBI
Celera	1	68,268,481 - 68,271,653 (-)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

ZNF579
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	61,716,987 - 61,722,807 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	63,446,731 - 63,452,581 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	52,624,374 - 52,628,197 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

ZNF579
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	102,149,647 - 102,152,926 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	102,142,455 - 102,152,936 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	102,206,579 - 102,209,852 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	102,803,053 - 102,806,326 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	102,803,110 - 102,806,315 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	102,440,531 - 102,443,802 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	102,152,181 - 102,155,454 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	102,915,613 - 102,918,887 (+)	NCBI		UU_Cfam_GSD_1.0

Znf579
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	1,784,346 - 1,787,855 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936981	109,824 - 113,085 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936981	109,764 - 113,085 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF579
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	59,702,917 - 59,706,780 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	59,703,269 - 59,706,444 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	54,490,813 - 54,494,022 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF579
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	48,164,925 - 48,168,822 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	48,165,819 - 48,167,513 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	821,855 - 826,026 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf579
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	1,821,169 - 1,822,761 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	1,819,302 - 1,823,105 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013509291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01074432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01207834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01129075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013509291 ⟹ XP_013364745

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955567	761,535 - 762,351 (+)	NCBI

Sequence:

show sequence

GCCCGGGGCCGGGGCCGGGGCCGGGGGCGCGGGGGCGCCGGAGCCCCGCGCGCGCCCCTGCCGT
GCCCCACGTGCGGCCGCCTCTTCCGCTTCCCCTACTACCTCTCGCGGCACCGGCTGAGCCACTC
GGGGCTGCGGCCGCACGCGTGCCCGCTGTGCCCCAAGGCCTTCCGGCGGCCCGCGCACCTGTCC
CGCCACCTGCGGGGCCACGGGCCCCAGCCCCCGCTGCGCTGCGCCGCCTGCCCGCGCACCTTCC
CCGAGCCCGCGCAGCTGCGCCGCCACCTGGCGCAGGAGCACGCGGGCGGCGAGGTGGAGCTGGC
CACGGAGCGCGCGGCCAAGGAGGAGGGCGAGGGCGCCCCCCAGCCCGCGGCGGGCGCGGAGGAG
CAGCCGTGGGCCGAGGGGGAGCCCACGCCGGCCGCGCCCCCCAGCGCCGAGCCCCGCACGCCGG
AGCCCGGGGCGGCGGAGGCCGGGGCGGCCGAGCTGCGCGCCGAGCTGGCGCTGGCGGCCGGGCG
GCAGGAGGAGAAGCAGGTGCTGCTGCAGGCCGACTGGACGCTGCTGTGCCTGCGCTGCCGCGAG
GCCTTCGCCACCAAGGGCGAGCTCAAGGCGCACCCGTGCCTGCGCCCCGAGGGCGAGCAGGAGG
GCGAGGGCGGGCCGCCGCCGCGCCCCAAGCGACACCAGTGCTCCATCTGCCTCAAGGCCTTCGC
CAGGCCCTGGTCGCTGTCGCGCCACCGGCTGGTCCACTCCACCGACCGCCCGTTCGTGTGCCCG
GACTGCGGCCTGGCCTTCCGCCTGGCCTCCTACCTCCGCCAGCACCGCCGAGTGCACGGCCCGC
TCAGCCTGCTGGTGCCGCTGCCCAAGAAGGACGACAGGGCCTCGGGCGCCCGGAACTCGGGGCG
AGGGCCCGAGGGCGGCGAGGGCGCCGCGGAGGGGGGCGGCGGCGGCGGCGAGAACGGGGGCGAC
GCCGGCCCCGCGCGGGCCCCCGCGGGCGAACCCCGATTTTGGTGCCCCGAGTGCGGCAAGGGCT
TCCGGCGCCGCGCGCACCTGCGCCAGCACGGCGTCACCCACTCAGGGGCGCGCCCCTTCCAGTG
CGTGCGCTGCCAGCGCGAGTTCAAGCGCCTGGCCGACCTGGCGCGCCACGCACAGGTGCACGCG
GGGGGCCCGGCCCCGCACCTCTGTCCTCGGTGCCCACGGCGCTTCTCACGCGCCTACAGCCTCC
TGCGCCACCAGCGGTGCCACCGCGCCGAGCTGGAGCTGGAGAGGGTGGCCGCGCTGCAGGCCGC
GCAGTCGCCGCTGCCGGAGCAGGAGGCTGAGGGGGTCCCACTGCCCCTTGCGCGCATCAAGGAG
GAGCCGCCCTCCCCGGGAACCCCACCGCAGTCCCCGGGAGCGCCCCCTGTCTTCCTCAGCGCCT
CCTGCTTTGACAGCCAAGACCACTCAGCCTTCAAGATGGAGGAGGACGAGGTGGACAGCAAAGC
CCACCTGCGCGGCTTGGGGGGCCTGGCCTCCTGACCCGCATGGCCCCTCCGCCCTCCATGGGAG
ACCCCGGTTTGCAGTGGAAAGAAAGGACCCCCTGCACCGCCACCCTTGAGCCCTGGCCCTAGGA
GCGGAGGCCCCGGGCCGCCCCCACCCCTCGCCCTCCCCAGACCCCGATGCCGCCCCGGTGCGTC
TTCAGGCAGGAGGACTTGGAAGGGGAGGCGGAGGACGCTAGGCCAGAGGGAGGCGGGAGGTGCT
TTGCCCGGCCGGCCGGTCCCCGTGACACACACTGGACATCACCTCTTCGGATCGGCCCGCAGGG
CGTTCCCGTGAGCGAAGGTCTGACCCTGTCCCTCTGTCTGTGAATAAATGTGAGCTGGTGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013364745	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013364745 ⟸ XM_013509291

- Sequence:

show sequence

ARGRGRGRGRGGAGAPRAPLPCPTCGRLFRFPYYLSRHRLSHSGLRPHACPLCPKAFRRPAHLS
RHLRGHGPQPPLRCAACPRTFPEPAQLRRHLAQEHAGGEVELATERAAKEEGEGAPQPAAGAEE
QPWAEGEPTPAAPPSAEPRTPEPGAAEAGAAELRAELALAAGRQEEKQVLLQADWTLLCLRCRE
AFATKGELKAHPCLRPEGEQEGEGGPPPRPKRHQCSICLKAFARPWSLSRHRLVHSTDRPFVCP
DCGLAFRLASYLRQHRRVHGPLSLLVPLPKKDDRASGARNSGRGPEGGEGAAEGGGGGGENGGD
AGPARAPAGEPRFWCPECGKGFRRRAHLRQHGVTHSGARPFQCVRCQREFKRLADLARHAQVHA
GGPAPHLCPRCPRRFSRAYSLLRHQRCHRAELELERVAALQAAQSPLPEQEAEGVPLPLARIKE
EPPSPGTPPQSPGAPPVFLSASCFDSQDHSAFKMEEDEVDSKAHLRGLGGLAS

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Znf579	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar