Gm41177 (predicted gene, 41177) - Rat Genome Database

Name: Gm41177
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm41177 (predicted gene, 41177) Mus musculus

Analyze

Symbol:

Gm41177

Name:

predicted gene, 41177

RGD ID:

10019444

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	65,409,766 - 65,422,786 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	65,409,783 - 65,422,881 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	65,172,317 - 65,185,337 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	65,172,355 - 65,185,432 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	14	62,929,243 - 62,942,232 (+)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:14610273	PMID:16141072	PMID:16141073

Genomics

Variants

Variants in Gm41177
396 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357589	Kdnw2_m	kidney weight 2 (mouse)			Not determined		14	20887473	121269804	Mouse
1357527	Epfpq1_m	epididymal fat percentage QTL 1 (mouse)			Not determined		14	21062450	71885801	Mouse
27226774	Tibl15_m	tibia length 15, 10 week (mouse)					14	30321957	87937436	Mouse
1300625	Cosz2_m	cocaine seizure 2 (mouse)			Not determined		14	35045797	68785736	Mouse
10043887	Cia50_m	collagen induced arthritis QTL 50 (mouse)			Not determined		14	37430185	71430320	Mouse
4142419	Tgq26_m	triglyceride QTL 26 (mouse)			Not determined			40337319	74337319	Mouse
1301777	Bglq15_m	body growth late QTL 15 (mouse)			Not determined		14	42962416	76962593	Mouse
1301424	Skull21_m	skull morphology 21 (mouse)			Not determined		14	42962416	76962593	Mouse
1300805	Mors3_m	modifier of obesity related sterility 3 (mouse)			Not determined		14	43037270	77037418	Mouse
1301091	Bbaa21_m	B.burgdorferi-associated arthritis 21 (mouse)			Not determined		14	43065847	77066045	Mouse
4141400	Nilac8_m	nicotine induced locomotor activity 8 (mouse)			Not determined		14	43065847	77066045	Mouse
1300605	El5_m	epilepsy 5 (mouse)			Not determined		14	49455425	83455556	Mouse
4142364	Pbwg18_m	postnatal body weight growth 18 (mouse)			Not determined		14	52281984	86282125	Mouse
1301489	Lbm10_m	lean body mass 10 (mouse)			Not determined		14	53761296	87761529	Mouse
12880432	Fgf23lq3_m	FGF23 serum level QTL 3 (mouse)					14	53937440	87937440	Mouse
10043889	Cia52_m	collagen induced arthritis QTL 52 (mouse)			Not determined		14	56082381	90082509	Mouse
1301562	Hwq1_m	heart weight quantitative locus 1 (mouse)			Not determined		14	56546745	90546941	Mouse
1357565	wrmod1_m	wobbler modifier 1 (mouse)			Not determined		14	58179640	101859473	Mouse
11039527	Ccc2_m	colitis susceptibility in the Collaborative Cross 2 (mouse)					14	59918612	94138217	Mouse
1300666	Fembm2_m	femoral bone morphometry 2 (mouse)			Not determined		14	62397460	96397680	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_166862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_166863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC124489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK076947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000223930

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	65,409,783 - 65,422,881 (+)	Ensembl
GRCm38.p6 Ensembl	14	65,172,355 - 65,185,432 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000225755

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	65,411,518 - 65,422,785 (+)	Ensembl
GRCm38.p6 Ensembl	14	65,174,069 - 65,185,336 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000245011

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	14	65,409,798 - 65,413,402 (+)	Ensembl

RefSeq Acc Id:

NR_166862

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	65,409,766 - 65,422,786 (+)	NCBI
GRCm38	14	65,172,317 - 65,185,337 (+)	NCBI

Sequence:

show sequence

AGGCTCCACCCACGAGCGGGCTGCAGGTGCCTGCATACTTTCTGCTCGCCCACCATGTACAGGC
AAGCTGATGCCCTCTGAGGGTTTCTGGAACAAAGAAGACAAGAAAATGAACCTGGCCAAGTTCA
CAGTGGAGACTGACCACCACATGTGAGTTTATTTTGCCTCACCAGTTCAGGTCACAGTTCACGG
TGGCCCCATGGTGTCCACAGTCAGGAAGCAAAGAGAGATGGATGCTTGTGCTCAACCCAACCTC
TCCTTTTTATCCAGCCTTGGATCACAGCCCACTTCATGATGGAGCAACACTGGGTCATCACCCA
AGTGCCAGGCACATGCAGCCACCCAGTTTTGGACTTTCAGCTTCTAGGACTGTATCCCATGTAA
GCCTCTTTATAAATTATCCAGCCTCAAGTGCTCTGTTATAGCAACAGTAACCAACTAAGACCCC
ATAACTCCAGCAACTAATACTTAATGAATAATTGCTGACTTAATCTCTCATCACTTGTATTCTA
TAAAGTTCTTTGTACAATCA

hide sequence

RefSeq Acc Id:

NR_166863

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	14	65,411,498 - 65,422,786 (+)	NCBI
GRCm38	14	65,174,049 - 65,185,337 (+)	NCBI

Sequence:

show sequence

ACCTCCCCCCCACCACCACTCCCTTACCCTTCTACCTCCTCGAATCACTGTCACAAAGGACTGT
TTTCGTGGTGGGGGAGCCCCAAATATCTACTGGGGCAAGGCTTTATAGAAAGCTACAAGCAAGA
TATCCAATGGGTGACGGGACAGCGATGAAAATGTGTGGCTTCTCTGTCTTCAGCCTGCGTCTGT
CTTAACCACCAGGCCAGGATCTACTCAATTCCACACGCAGACACGTTGACAATCAAGAATTTTT
TCATATACTGTGAACTTGACCTAGCTTCTCTACTCCTTATTCCAATGCTAAAGATACCTACCTG
CAGCCGTGACTAGAGCGAGAAGGCCGCGAAAAGTGGCCAAGTTCACAGTGGAGACTGACCACCA
CATGTGAGTTTATTTTGCCTCACCAGTTCAGGTCACAGTTCACGGTGGCCCCATGGTGTCCACA
GTCAGGAAGCAAAGAGAGATGGATGCTTGTGCTCAACCCAACCTCTCCTTTTTATCCAGCCTTG
GATCACAGCCCACTTCATGATGGAGCAACACTGGGTCATCACCCAAGTGCCAGGCACATGCAGC
CACCCAGTTTTGGACTTTCAGCTTCTAGGACTGTATCCCATGTAAGCCTCTTTATAAATTATCC
AGCCTCAAGTGCTCTGTTATAGCAACAGTAACCAACTAAGACCCCATAACTCCAGCAACTAATA
CTTAATGAATAATTGCTGACTTAATCTCTCATCACTTGTATTCTATAAAGTTCTTTGTACAATC
A

hide sequence

Promoters

RGD ID:

15094483

Promoter ID:

EPDNEWNC_M2380

Type:

initiation region

Name:

Gm41177_1

Description:

predicted gene, 41177 [Source:MGI Symbol;Acc:MGI:5624062]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	14	65,172,351 - 65,172,411	EPDNEWNC

RGD ID:

15094468

Promoter ID:

EPDNEWNC_M2381

Type:

multiple initiation site

Name:

Gm41177_2

Description:

predicted gene, 41177 [Source:MGI Symbol;Acc:MGI:5624062]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	14	65,174,050 - 65,174,110	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000114693	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000223930	ENTREZGENE
MGD	MGI:5624062	ENTREZGENE
NCBI Gene	Gm41177	ENTREZGENE
PhenoGen	Gm41177	PhenoGen
RNAcentral	URS0001980E02	RNACentral
	URS000198115C	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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