Gm40787 (predicted gene, 40787) - Rat Genome Database

Name: Gm40787
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gm40787 (predicted gene, 40787) Mus musculus

Analyze

Symbol:

Gm40787

Name:

predicted gene, 40787

RGD ID:

10015087

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	121,324,485 - 121,327,752 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	121,324,756 - 121,327,935 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	121,488,580 - 121,491,847 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	121,488,986 - 121,490,147 (+)	Ensembl	GRCm38		mm10	GRCm38
Celera	10	123,873,226 - 123,876,537 (+)	NCBI		Celera
Cytogenetic Map	10	D2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:14610273

Genomics

Variants

Variants in Gm40787
146 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1302067	Scc9_m	colon tumor susceptibility 9 (mouse)			Not determined		10	18259333	125575232	Mouse
27226772	Tibl13_m	tibia length 13, 10 week (mouse)					10	18875748	129635869	Mouse
27095911	Pglq15_m	pelvic girdle length QTL 15, 16 week (mouse)					10	39175996	129635869	Mouse
27226764	Tibl19_m	tibia length 19, 16 week (mouse)					10	39175996	129635869	Mouse
26884450	Sklq15_m	skull length QTL 15, 16 week (mouse)					10	59335822	122335905	Mouse
26884430	Zlq5_m	zygomatic length QTL 5, 10 week (mouse)					10	67835830	124835905	Mouse
26884405	Huml2_m	humerus length 2, 5 week (mouse)					10	69735830	130430862	Mouse
11353832	Pcholq4_m	plasma cholesterol QTL 4 (mouse)					10	73987216	125515907	Mouse
11353843	Gluq1_m	blood glucose QTL 1 (mouse)					10	73987216	125515907	Mouse
1357594	Estoq3_m	embryo survival total QTL 3 (mouse)			Not determined		10	84079650	122041528	Mouse
1357622	Espq3_m	embryo survival preimplantation QTL 3 (mouse)			Not determined		10	84079650	122041528	Mouse
4141479	W10q8_m	weight 10 weeks QTL 8 (mouse)			Not determined			84079650	122041528	Mouse
4142496	W6q8_m	weight 6 weeks QTL 8 (mouse)			Not determined			84079650	122041528	Mouse
4141387	Lgaq5_m	late growth adjusted QTL 5 (mouse)			Not determined			84079650	122041528	Mouse
4142365	Egq9_m	early growth QTL 9 (mouse)			Not determined			84079650	122041528	Mouse
1357779	Tesq3_m	testis weight QTL 3 (mouse)			Not determined		10	84079650	122041528	Mouse
1300921	Skl4_m	skeletal size (tail length) 4 (mouse)			Not determined		10	88088254	122088391	Mouse
4142386	Tgq20_m	triglyceride QTL 20 (mouse)			Not determined			88836456	122836456	Mouse
1301758	Fcsa3_m	femoral cross-sectional area 3 (mouse)			Not determined		10	89927651	123927754	Mouse
11039516	Ltpr5_m	Leishmania tropica response 5 (mouse)					10	90506901	125575232	Mouse
1357544	Vtbt10_m	vertebral trabecular bone trait 10 (mouse)			Not determined		10	97217101	130530862	Mouse
4142461	Bmd25_m	bone mineral density 25 (mouse)			Not determined		10	97217101	130530862	Mouse
11533919	Mvb4_m	modifier of vibrator 4 (mouse)					3	97217101	130530862	Mouse
11533921	Mvb2_m	modifier of vibrator 2 (mouse)					10	97217101	130530862	Mouse
12880413	V125Dq9_m	vitamin D active form serum level QTL 9 (mouse)					10	97535905	130530862	Mouse
4141402	T2dm1sa_m	type 2 diabetes mellitus 1 in SMXA RI mice (mouse)			Not determined			97758644	130530862	Mouse
11040593	Lmr5e_m	leishmaniasis resistance 5e (mouse)					10	99220635	130530862	Mouse
11040595	Lmr5c_m	leishmaniasis resistance 5c (mouse)					10	99220635	130530862	Mouse
11040597	Lmr5a_m	leishmaniasis resistance 5a (mouse)					10	99220635	130530862	Mouse
1357744	Cfbw4_m	cystic fibrosis body weight 4 (mouse)			Not determined		10	100986516	130530862	Mouse
1301968	Estq4_m	estradiol regulated response QTL 4 (mouse)			Not determined		10	100986516	130530862	Mouse
1301901	Im5_m	immunoregulatory 5 (mouse)			Not determined		10	101497164	130530862	Mouse
4141361	Cfmq3_m	cystic fibrosis modifier QTL 3 (mouse)			Not determined		10	101497164	130530862	Mouse
1300678	Leg2_m	longevity extending gene 2 (mouse)			Not determined		10	102506908	130530862	Mouse
27226725	Tibw1_m	tibia width 1, proximal, 5 week (mouse)					10	102735861	123235905	Mouse
1301895	Exq1_m	exploratory and excitability QTL 1 (mouse)			Not determined		10	102847852	130530862	Mouse
14696727	Kidrq2_m	kidney weight, right QTL 2 (mouse)					10	102902508	130530862	Mouse
4141007	Obrq10_m	obesity resistance QTL 10 (mouse)			Not determined			103243727	130530862	Mouse
4141487	Tgq21_m	triglyceride QTL 21 (mouse)			Not determined			104110021	130530862	Mouse
14746996	Manh69_m	mandible shape 69 (mouse)					10	104763638	130530862	Mouse
1302200	Sle12_m	systematic lupus erythematosus susceptibility 12 (mouse)			Not determined		10	105041304	130530862	Mouse
1357482	Nhdlq4_m	non-HDL QTL 4 (mouse)			Not determined		10	105041304	130530862	Mouse
1300679	Nociq2_m	nociceptive sensitivity inflammatory QTL 2 (mouse)			Not determined		10	105041304	130530862	Mouse
11040594	Lmr5f_m	leishmaniasis resistance 5f (mouse)					10	105179713	130530862	Mouse
11040596	Lmr5d_m	leishmaniasis resistance 5d (mouse)					10	105179713	130530862	Mouse
11040598	Lmr5b_m	leishmaniasis resistance 5b (mouse)					10	105179713	130530862	Mouse
4142089	Obrq9_m	obesity resistance QTL 9 (mouse)			Not determined			108515907	130530862	Mouse
4141153	Ltgq2_m	liver triglyceride QTL 2 (mouse)			Not determined			108515907	130530862	Mouse
11041664	Lmr25_m	leishmaniasis resistance 25 (mouse)					10	108575094	130530862	Mouse
11039496	Ltpr5b_m	Leishmania tropica response 5b (mouse)					10	108575094	130530862	Mouse
11049570	Lmr25b_m	leishmaniasis resistance 25b (mouse)					10	108575094	130530862	Mouse
11049563	Lmr25a_m	leishmaniasis resistance 25a (mouse)					10	108575094	130530862	Mouse
27226722	Tibw7_m	tibia width 7, proximal, 16 week (mouse)					10	108635861	125435869	Mouse
27095902	Scvln11_m	sacral vertebrae length 2, 10 week (mouse)					10	110035861	125435869	Mouse
11353822	Insq12_m	insulin QTL 12 (mouse)					10	110453347	125515907	Mouse
11353823	Homaq2_m	homeostatic model assessment QTL 2 (mouse)					10	110453347	125515907	Mouse
26884391	Skwq11_m	skull length QTL 11, 16 week (mouse)					10	113535905	121635905	Mouse
26884433	Zlq2_m	zygomatic length QTL 2, 5 week (mouse)					10	113535905	125735869	Mouse
26884383	Bzwq3_m	bi-zygomatic width QTL 3, 5 week (mouse)					10	114235905	122735905	Mouse
13506931	Recrq11_m	recombination rate in male meiosis QTL 11 (mouse)					10	114335905	123635905	Mouse
26884377	Skwq3_m	skull length QTL 3, 5 week (mouse)					10	114635905	122735905	Mouse
1300796	Lmr5_m	leishmaniasis resistance 5 (mouse)			Not determined		10	116220635	122179828	Mouse
27226742	Metcl4_m	metatarsal-calcaneal length 4, 5 week (mouse)					10	118135905	125435869	Mouse
27226795	Scvln17_m	sacral vertebrae length 2, 16 week (mouse)					10	118435905	124835905	Mouse
27226718	Tibw3_m	tibia width 3, proximal, 10 week (mouse)					10	118835905	125435869	Mouse
27095926	Pglq4_m	pelvic girdle length QTL 4, 5 week (mouse)					10	119035905	124835905	Mouse
26884443	Sklq5_m	skull length QTL 5, 5 week (mouse)					10	119035905	124835905	Mouse
27095906	Scvln5_m	sacral vertebrae length 2, 5 week (mouse)					10	119035905	124835905	Mouse
27226736	Metcl15_m	metatarsal-calcaneal length 15, 16 week (mouse)					10	119035905	124835905	Mouse
27226747	Metcl10_m	metatarsal-calcaneal length 10, 10 week (mouse)					10	119035905	124835905	Mouse
27226784	Tibl4_m	tibia length 4, 5 week (mouse)					10	119035905	125435869	Mouse
27226791	Feml8_m	femur length 8, 5 week (mouse)					10	119035905	125735869	Mouse
1301701	Aggr1_m	aggression 1 (mouse)			Not determined		10	119506908	125575232	Mouse
13801032	Hwtf2_m	heart weight by femur 2 (mouse)					10	119835905	121835905	Mouse
11353834	Pcholq2_m	plasma cholesterol QTL 2 (mouse)					10	120243727	125515907	Mouse
11353838	Gluq3_m	blood glucose QTL 3 (mouse)					10	120243727	125515907	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_872127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_872128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC124413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000218056

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	121,324,756 - 121,327,682 (+)	Ensembl
GRCm38.p6 Ensembl	10	121,488,986 - 121,490,147 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000240790

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	121,324,778 - 121,327,935 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000244795

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	10	121,324,891 - 121,327,682 (+)	Ensembl

RefSeq Acc Id:

XR_872127

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	10	121,324,485 - 121,326,087 (+)	NCBI
GRCm38	10	121,488,580 - 121,490,182 (+)	NCBI

Sequence:

show sequence

ATAAGCTCTACCCAGTCACCCAGGCCCTCAATCACACTCTCAGTCCCCTGTTGAAAAATCTAAA
ATTGTTATAGACTAGTCGACGATCCATGCCTTGAGCCAAGGTCTTGAACATACACTGAGGAAGT
AAGACTTTCTCTACCAGGGGCAAGAGTCAGGACAAGTCATGCAGAACTGTTATGGGCCAGTGGA
TGGGGGCTGTGTCGAAAGAGCAAGGAACAGGGGCAGACAAACAAGCTCTGCCTACGCTTGGGTA
ACGCTTGGGTAACTTCCCTTGTTTATGACACCAACCTACAGTGTGGAGGACAGCTTCTAGCTGG
CCCCTGGGAAACGCAACTCCAGGATCTTGACCTTTGCCAATCATTGGCTGATGGTGGCAGAAGC
ACACCTCCTCCTTTTTTTTAATGTGAAGATGTGTGCAGCAAACCACAGATGGAGGGAGCAGGAA
GAAATGGGGCCGTTTCTAAAGAAATTAGATGCCGGAGGAGAAGAAGGTTCTAAGTCCCATGGAG
CTGAAGTTCCAGCTGTTGAGAGCTCCCCAAAGAGGCTGCTAGGAATGGAACTCCAGTCCTCTGG
AAGAACAAGTGCTTTAAACCATTAAGCATCTCTCCGACTGCAGGAACTGTTTGAAACCTTTGCA
GTGGCCAAGGTAGATTATCCAATTGTTTGTTTGTACGTCAGGCTTTATTGAACTATGCCCTGGA
AAGGGTGACATCTGCTGCGTATAAATGACATACTGATTTTGTTTTTTTCCGTAA

hide sequence

RefSeq Acc Id:

XR_872128

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	10	121,324,488 - 121,327,752 (+)	NCBI
GRCm38	10	121,488,583 - 121,491,847 (+)	NCBI

Sequence:

show sequence

AGCTCTACCCAGTCACCCAGGCCCTCAATCACACTCTCAGTCCCCTGTTGAAAAATCTAAAATT
GTTATAGACTAGTCGACGATCCATGCCTTGAGCCAAGGTCTTGAACATACACTGAGGAAGTAAG
ACTTTCTCTACCAGGGGCAAGAGTCAGGACAAGTCATGCAGAACTGTTATGGGCCAGTGGATGG
GGGCTGTGTCGAAAGAGCAAGGAACAGGGGCAGACAAACAAGCTCTGCCTACGCTTGGGTAACG
CTTGGGTAACTTCCCTTGTTTATGACACCAACCTACAGTGTGGAGGACAGCTTCTAGCTGGCCC
CTGGGAAACGCAACTCCAGGATCTTGACCTTTGCCAATCATTGGCTGATGGTGGCAGAAGCACA
CCTCCTCCTTTTTTTTAATGTGAAGATGTGTGCAGCAAACCACAGATGGAGGGAGCAGGAAGAA
ATGGGGCCGTTTCTAAAGAAATTAGATGCCGGAGGAGAAGAAGGTTCTAAGTCCCATGGAGCTG
AAGTTCCAGCTGTTGAGAGCTCCCCAAAGAGGCTGCTAGGAATGGAACTCCAGTCCTCTGGAAG
AACAAGTGCTTTAAACCATTAAGCATCTCTCCGACTGCAGGAACTGTTTGAAACCTTTGCAGTG
GCCAAGGAATAGAAACCCTAACTATGGAGCTGGTGAGATGGCTCACT

hide sequence

Promoters

RGD ID:

15093857

Promoter ID:

EPDNEWNC_M1775

Type:

multiple initiation site

Name:

Gm40787_1

Description:

predicted gene, 40787 [Source:MGI Symbol;Acc:MGI:5623672]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	10	121,488,988 - 121,489,048	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000112539	Ensembl
MGD	MGI:5623672	ENTREZGENE
NCBI Gene	Gm40787	ENTREZGENE
PhenoGen	Gm40787	PhenoGen

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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