Gm39380 (predicted gene, 39380) - Rat Genome Database

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Gene: Gm39380 (predicted gene, 39380) Mus musculus
Analyze
Symbol: Gm39380
Name: predicted gene, 39380
RGD ID: 10012764
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39980,563,979 - 80,684,419 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl980,592,048 - 80,595,776 (+)EnsemblGRCm39 Ensembl
GRCm38980,681,926 - 80,802,366 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl980,709,995 - 80,713,723 (+)EnsemblGRCm38mm10GRCm38
Celera977,788,219 - 77,821,017 (+)NCBICelera
Cytogenetic Map9E1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm39380
3889 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96504119195522808Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96583105686577967Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96926774798701707Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976024387101406120Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000214710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl980,592,048 - 80,595,776 (+)Ensembl
GRCm38.p6 Ensembl980,709,995 - 80,713,723 (+)Ensembl
RefSeq Acc Id: XR_001779238
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39980,563,979 - 80,684,419 (+)NCBI
GRCm38980,681,926 - 80,802,366 (+)NCBI
Sequence:
RefSeq Acc Id: XR_870942
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39980,563,979 - 80,596,995 (+)NCBI
GRCm38980,681,926 - 80,714,942 (+)NCBI
Sequence:
RefSeq Acc Id: XR_870943
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39980,563,979 - 80,596,995 (+)NCBI
GRCm38980,681,926 - 80,714,942 (+)NCBI
Sequence:
RefSeq Acc Id: XR_870944
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39980,563,979 - 80,662,341 (+)NCBI
GRCm38980,681,926 - 80,780,288 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000111717 Ensembl
MGD MGI:5622265 ENTREZGENE
NCBI Gene Gm39380 ENTREZGENE
PhenoGen Gm39380 PhenoGen