Gm41410 (predicted gene, 41410) - Rat Genome Database

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Gene: Gm41410 (predicted gene, 41410) Mus musculus
Analyze
Symbol: Gm41410 (Ensembl: 1700037C18Rik)
Name: predicted gene, 41410 (Ensembl:RIKEN cDNA 1700037C18 gene)
RGD ID: 10005287
MGI Page MGI
Description:
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,713,043 - 3,726,517 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,713,043 - 3,726,553 (-)EnsemblGRCm39 Ensembl
GRCm38163,895,179 - 3,908,653 (-)NCBIGRCm38GRCm38mm10GRCm38
Celera164,525,670 - 4,527,804 (-)NCBICelera
Cytogenetic Map16A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm41410
220 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_153801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC129021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000006139   ⟹   ENSMUSP00000006139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,713,045 - 3,725,621 (-)Ensembl
RefSeq Acc Id: ENSMUST00000115859   ⟹   ENSMUSP00000111525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,722,167 - 3,726,553 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123235   ⟹   ENSMUSP00000135233
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,724,877 - 3,726,487 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177221   ⟹   ENSMUSP00000134800
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,724,122 - 3,725,515 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177323   ⟹   ENSMUSP00000135766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,723,662 - 3,725,566 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177519
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl163,713,043 - 3,726,517 (-)Ensembl
RefSeq Acc Id: NR_153801
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39163,713,043 - 3,726,517 (-)NCBI
GRCm38163,895,179 - 3,908,653 (-)NCBI
Sequence:
Promoters
RGD ID:8685310
Promoter ID:EPDNEW_M20685
Type:initiation region
Name:Gm41410_1
Description:Mus musculus predicted gene, 41410 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38163,907,702 - 3,907,762EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000005983 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000177519 ENTREZGENE
MGD MGI:5624295 ENTREZGENE
NCBI Gene Gm41410 ENTREZGENE
PhenoGen Gm41410 PhenoGen
RNAcentral URS0000CCDF72 RNACentral