MYL12AP1 (MYL12A pseudogene 1) - Rat Genome Database

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Gene: MYL12AP1 (MYL12A pseudogene 1) Homo sapiens
Analyze
Symbol: MYL12AP1
Name: MYL12A pseudogene 1
RGD ID: 10002843
HGNC Page HGNC:51648
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: myosin light chain 12A pseudogene 1
Related Functional Gene: MYL12A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38893,849,495 - 93,850,283 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl893,849,561 - 93,850,075 (+)EnsemblGRCh38hg38GRCh38
GRCh37894,861,723 - 94,862,511 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36894,930,965 - 94,931,484 (+)NCBINCBI36Build 36hg18NCBI36
Celera891,047,852 - 91,048,368 (+)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef890,069,259 - 90,069,775 (+)NCBIHuRef
CHM1_1894,902,054 - 94,902,570 (+)NCBICHM1_1
T2T-CHM13v2.0894,974,533 - 94,975,321 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:118
Interacting mature miRNAs:118
Transcripts:ENST00000518490
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 2 1 1
Low 24 191 56 15 325 15 202 157 89 30 89 113 2 26 172
Below cutoff 1030 1893 767 180 745 98 2416 1232 1482 120 698 838 88 734 1664

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000518490
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl893,849,561 - 93,850,075 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MYL12AP1 COSMIC
Ensembl Genes ENSG00000254387 Ensembl
GTEx ENSG00000254387 GTEx
HGNC ID HGNC:51648 ENTREZGENE
Human Proteome Map MYL12AP1 Human Proteome Map
NCBI Gene MYL12AP1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-11-30 MYL12AP1  MYL12A pseudogene 1  MYL12AP1  myosin light chain 12A pseudogene 1  Symbol and/or name change 19259463 PROVISIONAL
2016-02-18 MYL12AP1  myosin light chain 12A pseudogene 1    myosin, light chain 12A pseudogene 1  Symbol and/or name change 5135510 APPROVED