Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

GENE - TERM ANNOTATION REPORT

4 Annotations Found.

An association has been curated linking Col1a1 and protein binding in Rattus norvegicus.        

  • The association was inferred from physical interaction (IPI)
    		•  
  • The annotation was made from Thomas EK, etal., J Biol Chem. 2005 Jun 17;280(24):22596-605. Epub 2005 Apr 6.
  • The annotation has been inferred from physical interaction with Mrc2 (Rattus norvegicus)
  • 1 additional annotations were made from Thomas EK, etal., J Biol Chem. 2005 Jun 17;280(24):22596-605. Epub 2005 Apr 6.
  • 14764 RGD objects have been annotated to protein binding  (GO:0005515)
  • 138 papers in RGD have been used to annotate Col1a1


    • An association has been curated linking Col1a1 and protein binding in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD pipelines: Rat ISO annotations derived from the GO annotations of orthologous genes in other species.
  • The annotation has been inferred from sequence orthology with COL1A1 (Homo sapiens)
  • 14764 RGD objects have been annotated to protein binding  (GO:0005515)
  • 138 papers in RGD have been used to annotate Col1a1
  • Qualifier: enables
  • Curation Notes: UniProtKB:O01949|UniProtKB:P02751|UniProtKB:P08123|UniProtKB:Q14145|UniProtKB:Q15035 (PMID:14749390), (PMID:18375391), (PMID:20015075), (PMID:20541508), (PMID:25290767), (PMID:26848503), (PMID:32296183)
  • Original References(s): PMID:14749390 PMID:18375391 PMID:20015075 PMID:20541508 PMID:25290767 PMID:26848503 PMID:32296183


    • An association has been curated linking Col1a1 and protein binding in Rattus norvegicus.        

  • The association was inferred from physical interaction (IPI)
    		•  
  • The annotation was made from Paracuellos P, etal., Structure. 2015 Nov 3;23(11):2133-42. doi: 10.1016/j.str.2015.09.004. Epub 2015 Oct 15.
  • The annotation has been inferred from physical interaction with UniProtKB:Q9UBG0
  • 14764 RGD objects have been annotated to protein binding  (GO:0005515)
  • 138 papers in RGD have been used to annotate Col1a1
  • Qualifier: enables
  • Curation Notes: PMID:26481812


    • An association has been curated linking Col1a1 and protein binding in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD pipelines: Rat ISO annotations derived from the GO annotations of orthologous genes in other species.
  • The annotation has been inferred from sequence orthology with Col1a1 (Mus musculus)
  • 14764 RGD objects have been annotated to protein binding  (GO:0005515)
  • 138 papers in RGD have been used to annotate Col1a1
  • Qualifier: enables
  • Curation Notes: MGI:88468|PR:P04202|PR:P11087|PR:P21274|PR:Q01149 (PMID:17018525), (PMID:7629088), (PMID:9213002)
  • Original References(s): PMID:17018525 PMID:7629088 PMID:9213002


    • Go Back to source page   Continue to Ontology report