Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

GENE - TERM ANNOTATION REPORT

3 Annotations Found.

An association has been curated linking Axin2 and oral squamous cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Andrade Filho PA, etal., J Dent Res. 2011 Jun;90(6):740-6. doi: 10.1177/0022034511401622. Epub 2011 Mar 10.
  • The annotation has been inferred from sequence orthology with AXIN2 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 13 additional annotations were made from Andrade Filho PA, etal., J Dent Res. 2011 Jun;90(6):740-6. doi: 10.1177/0022034511401622. Epub 2011 Mar 10.
  • 100 RGD objects have been annotated to oral squamous cell carcinoma  (DOID:0050866)
  • 38 papers in RGD have been used to annotate Axin2
  • Qualifier: susceptibility
  • Curation Notes: DNA:SNP:intron: C>T (rs3923087)(human)


    • An association has been curated linking Axin2 and oral squamous cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from An YZ, etal., BMC Cancer. 2020 Oct 12;20(1):987. doi: 10.1186/s12885-020-07495-9.
  • The annotation has been inferred from sequence orthology with AXIN2 (Homo sapiens) [(IEP) inferred from expression pattern, (IMP) inferred from mutant phenotype]
  • 5 additional annotations were made from An YZ, etal., BMC Cancer. 2020 Oct 12;20(1):987. doi: 10.1186/s12885-020-07495-9.
  • 100 RGD objects have been annotated to oral squamous cell carcinoma  (DOID:0050866)
  • 38 papers in RGD have been used to annotate Axin2
  • Qualifier: disease_progression


    • An association has been curated linking Axin2 and oral squamous cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from An YZ, etal., BMC Cancer. 2020 Oct 12;20(1):987. doi: 10.1186/s12885-020-07495-9.
  • The annotation has been inferred from sequence orthology with AXIN2 (Homo sapiens) [(IEP) inferred from expression pattern, (IMP) inferred from mutant phenotype]
  • 5 additional annotations were made from An YZ, etal., BMC Cancer. 2020 Oct 12;20(1):987. doi: 10.1186/s12885-020-07495-9.
  • 100 RGD objects have been annotated to oral squamous cell carcinoma  (DOID:0050866)
  • 38 papers in RGD have been used to annotate Axin2
  • Qualifier: ameliorates


    • Go Back to source page   Continue to Ontology report