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GENE - TERM ANNOTATION REPORT

2 Annotations Found.

An association has been curated linking Ptpn13 and head and neck squamous cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Niu J, etal., Carcinogenesis. 2009 Dec;30(12):2053-8. doi: 10.1093/carcin/bgp265.
  • The annotation has been inferred from sequence orthology with PTPN13 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 2 additional annotations were made from Niu J, etal., Carcinogenesis. 2009 Dec;30(12):2053-8. doi: 10.1093/carcin/bgp265.
  • 143 RGD objects have been annotated to head and neck squamous cell carcinoma  (DOID:5520)
  • 21 papers in RGD have been used to annotate Ptpn13
  • Qualifier: susceptibility
  • Curation Notes: DNA:SNPs:cds:c.4566 A>G(I1522M)(rs2230600), c.6241 T>G (Y2081D)(rs989902)(human)


    • An association has been curated linking Ptpn13 and head and neck squamous cell carcinoma in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from Mita Y, etal., J Cancer Res Clin Oncol. 2010 Feb;136(2):249-59. doi: 10.1007/s00432-009-0656-7. Epub 2009 Aug 12.
  • The annotation has been inferred from sequence orthology with PTPN13 (Homo sapiens) [(IAGP) inferred by association of genotype and phenotype]
  • 20 additional annotations were made from Mita Y, etal., J Cancer Res Clin Oncol. 2010 Feb;136(2):249-59. doi: 10.1007/s00432-009-0656-7. Epub 2009 Aug 12.
  • 143 RGD objects have been annotated to head and neck squamous cell carcinoma  (DOID:5520)
  • 21 papers in RGD have been used to annotate Ptpn13
  • Qualifier: susceptibility
  • Curation Notes: DNA:missense mutations:cds:p.I1522M, p.Y2081D (human)


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