Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:tRNA-splicing ligase complex
go back to main search page
Accession:GO:0072669 term browser browse the term
Definition:A protein complex that catalyzes the ligation of cleaved pre-tRNAs by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester.
Synonyms:xref: MetaCyc:ENTMULTI-CPLX


show annotations for term's descendants           Sort by:
tRNA-splicing ligase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C12H2orf49 chromosome 12 C2orf49 homolog part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr2A:96,469,934...96,492,745
Ensembl chr2A:106,422,944...106,445,634 		JBrowse link
G DDX1 DEAD-box helicase 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr2A:15,582,499...15,619,751
Ensembl chr2A:15,716,044...15,753,623 		JBrowse link
G FAM98A family with sequence similarity 98 member A part_of IEA TreeGrafter GO_REF:0000118 NCBI chr2A:33,591,783...33,607,386
Ensembl chr2A:34,303,009...34,318,627 		JBrowse link
G FAM98B family with sequence similarity 98 member B part_of IEA TreeGrafter GO_REF:0000118 NCBI chr15:17,383,298...17,415,682 JBrowse link
G FAM98C family with sequence similarity 98 member C part_of IEA TreeGrafter GO_REF:0000118 NCBI chr19:35,497,144...35,503,168
Ensembl chr19:44,068,957...44,074,586 		JBrowse link
G LOC103785619 protein archease-like part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 4:143,053,780...143,056,291 JBrowse link
G RTCB RNA 2',3'-cyclic phosphate and 5'-OH ligase part_of IEA Ensembl
TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr22:13,394,160...13,418,862
Ensembl chr22:31,248,280...31,273,030 		JBrowse link
G RTRAF RNA transcription, translation and transport factor part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:32,589,078...32,604,286
Ensembl chr14:50,874,274...50,889,493 		JBrowse link
G ZBTB8OS zinc finger and BTB domain containing 8 opposite strand part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:31,913,890...31,944,132
Ensembl chr 1:33,060,314...33,111,089 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17180
    protein-containing complex 5905
      catalytic complex 1707
        tRNA-splicing ligase complex 9
paths to the root