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ONTOLOGY REPORT - ANNOTATIONS

Term:wybutosine metabolic process
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Accession:GO:0031590 term browser browse the term
Definition:The chemical reactions and pathways involving wybutosine, 3H-imidazo[1,2-alpha]purine-7-butanoic acid, 4,9-dihydro- alpha-[(methoxycarbonyl)amino]- 4,6-dimethyl-9-oxo- 3-beta-D-ribofuranosyl methyl ester, a modified nucleoside found in some tRNA molecules.
Synonyms:exact_synonym: wybutosine metabolism;   yW metabolic process;   yW metabolism


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wybutosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM8 lysine demethylase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:27,203,526...27,221,768
Ensembl chr16:27,203,508...27,221,768 		JBrowse link
G LCMT2 leucine carboxyl methyltransferase 2 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr15:43,323,649...43,330,573
Ensembl chr15:43,323,649...43,330,582 		JBrowse link
G TRMT12 tRNA methyltransferase 12 homolog involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:124,450,820...124,453,026
Ensembl chr 8:124,450,820...124,462,150 		JBrowse link
G TYW1 tRNA-yW synthesizing protein 1 homolog involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:66,996,833...67,239,514
Ensembl chr 7:66,995,173...67,239,514 		JBrowse link
G TYW1B tRNA-yW synthesizing protein 1 homolog B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:72,574,513...72,828,200
Ensembl chr 7:72,558,744...72,828,200 		JBrowse link
G TYW3 tRNA-yW synthesizing protein 3 homolog involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:74,733,152...74,766,677
Ensembl chr 1:74,733,152...74,766,678 		JBrowse link
G TYW5 tRNA-yW synthesizing protein 5 involved_in IDA
IBA		 (PMID:20739293), (PMID:20972222) UniProt
GO_Central		 PMID:20739293 PMID:20972222 GO_REF:0000033 NCBI chr 2:199,928,913...199,955,491
Ensembl chr 2:199,928,913...199,955,736 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    metabolic process 12437
      organic substance metabolic process 11940
        organonitrogen compound metabolic process 5576
          wybutosine metabolic process 7
            wybutosine biosynthetic process 7
Path 2
Term Annotations click to browse term
  biological_process 19612
    metabolic process 12437
      organic substance metabolic process 11940
        carbohydrate derivative metabolic process 1200
          glycosyl compound metabolic process 101
            wybutosine metabolic process 7
              wybutosine biosynthetic process 7
paths to the root