Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:deoxyribonucleoside monophosphate biosynthetic process
go back to main search page
Accession:GO:0009157 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: deoxyribonucleoside monophosphate anabolism;   deoxyribonucleoside monophosphate biosynthesis;   deoxyribonucleoside monophosphate formation;   deoxyribonucleoside monophosphate synthesis


show annotations for term's descendants           Sort by:
deoxyribonucleoside monophosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC112350.1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr 3:109,190,742...109,191,879 JBrowse link
G Dguok deoxyguanosine kinase acts_upstream_of_or_within ISO (MGI:1343573|PMID:10455141) RGD PMID:10455141 MGI:1343573 NCBI chr 4:115,987,101...116,014,733
Ensembl chr 4:115,979,094...116,014,733 		JBrowse link
G ENSRNOG00000062465 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr14:97,517,407...97,518,328 JBrowse link
G ENSRNOG00000063353 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr 4:54,767,356...54,768,047 JBrowse link
G Tk1 thymidine kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000108
(MGI:54423|PMID:204065)		 GOC
RGD		 PMID:204065 GO_REF:0000108 MGI:54423 NCBI chr10:103,034,755...103,046,125
Ensembl chr10:103,031,521...103,046,920 		JBrowse link
G Tk2 thymidine kinase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:708,859...731,786
Ensembl chr19:708,891...730,924 		JBrowse link
dAMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:2835956)		 Ensembl
RGD		 PMID:2835956 GO_REF:0000107 NCBI chr15:2,863,241...3,246,453
Ensembl chr15:2,863,244...3,246,510 		JBrowse link
G Dck deoxycytidine kinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:8748457)		 Ensembl
RGD		 PMID:8748457 GO_REF:0000107 NCBI chr14:19,305,218...19,326,247
Ensembl chr14:19,305,218...19,326,247 		JBrowse link
G Dguok deoxyguanosine kinase involved_in ISO (PMID:19221117) RGD PMID:19221117 NCBI chr 4:115,987,101...116,014,733
Ensembl chr 4:115,979,094...116,014,733 		JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase involved_in ISO (PMID:10952785), (PMID:15322254) RGD PMID:10952785 PMID:15322254 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) RGD PMID:19513116 MGI:3849912 NCBI chr10:45,468,698...45,490,833
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Tyms thymidylate synthetase involved_in IDA
ISO
IBA
IEA		 (PMID:22057276)
GO_REF:0000033
GO_REF:0000002
(PMID:11278511), (PMID:15093541), (PMID:8845352)		 RGD
GO_Central
InterPro		 PMID:8845352 PMID:11278511 PMID:15093541 PMID:22057276 PMID:9894005 GO_REF:0000002 GO_REF:0000033, RGD:1545055 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536 		JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 Ensembl chr 1:48,369,044...48,369,595 JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IBA
IEA		 GO_REF:0000033
GO_REF:0000041		 GO_Central
UniProt
RGD		 PMID:3032103 PMID:1315924 GO_REF:0000033 GO_REF:0000041, RGD:2300191, RGD:2301218 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G ENSRNOG00000069939 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 Ensembl chr13:67,763,505...67,765,634 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11456
      biosynthetic process 8172
        organic substance biosynthetic process 8107
          organophosphate biosynthetic process 538
            nucleoside phosphate biosynthetic process 256
              nucleoside monophosphate biosynthetic process 51
                deoxyribonucleoside monophosphate biosynthetic process 13
                  purine deoxyribonucleoside monophosphate biosynthetic process + 3
                  pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 5
Path 2
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11456
      organic substance metabolic process 10970
        organic cyclic compound metabolic process 6031
          nucleobase-containing compound metabolic process 5524
            nucleobase-containing small molecule metabolic process 688
              nucleoside phosphate metabolic process 616
                nucleoside monophosphate metabolic process 86
                  nucleoside monophosphate biosynthetic process 51
                    deoxyribonucleoside monophosphate biosynthetic process 13
                      purine deoxyribonucleoside monophosphate biosynthetic process + 3
                      pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 5
paths to the root