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ONTOLOGY REPORT - ANNOTATIONS

Term:synaptonemal complex assembly
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Accession:GO:0007130 term browser browse the term
Definition:The cell cycle process in which the synaptonemal complex is formed. This is a structure that holds paired chromosomes together during prophase I of meiosis and that promotes genetic recombination.
Synonyms:exact_synonym: synaptonemal complex formation


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synaptonemal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACYP1 acylphosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:98,220,318...98,265,187
Ensembl chr 7:98,220,555...98,247,125 		JBrowse link
G AGO4 argonaute RISC component 4 acts_upstream_of_or_within ISO (PMID:22863743) MGI PMID:22863743 NCBI chr 6:91,967,499...92,013,030
Ensembl chr 6:91,973,119...92,012,990 		JBrowse link
G BAG6 BAG cochaperone 6 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:23,756,897...23,768,659
Ensembl chr 7:23,756,899...23,775,892 		JBrowse link
G C1H14orf39 chromosome 1 C14orf39 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:189,330,137...189,471,874
Ensembl chr 1:189,407,490...189,470,541 		JBrowse link
G C1orf146 chromosome 1 open reading frame 146 involved_in IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 Ensembl chr 4:124,812,631...124,833,375 JBrowse link
G C4H1orf146 chromosome 4 C1orf146 homolog involved_in ISO (MGI:6400008|PMID:30949703) UniProt PMID:30949703 MGI:6400008 NCBI chr 4:124,813,337...124,843,305 JBrowse link
G CPEB1 cytoplasmic polyadenylation element binding protein 1 acts_upstream_of_or_within ISO (PMID:12815066)
(PMID:11702780)		 MGI PMID:11702780 PMID:12815066 NCBI chr 7:52,329,054...52,382,408
Ensembl chr 7:52,304,472...52,383,732 		JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17599069) Ensembl
MGI		 PMID:17599069 GO_REF:0000107 NCBI chr 7:23,977,683...23,992,673
Ensembl chr 7:23,977,683...23,993,478 		JBrowse link
G HORMAD1 HORMA domain containing 1 involved_in IEA
ISS		 Ensembl
TreeGrafter
UniProt		 GO_REF:0000024 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:98,447,298...98,469,650
Ensembl chr 4:98,449,891...98,469,650 		JBrowse link
G MCMDC2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO (PMID:27760146) MGI PMID:27760146 NCBI chr 4:67,850,585...67,892,438
Ensembl chr 4:67,847,817...67,895,867 		JBrowse link
G MEIOC meiosis specific with coiled-coil domain involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:18,652,582...18,663,227
Ensembl chr12:18,651,511...18,671,987 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 acts_upstream_of_or_within ISO (PMID:22711701)
(PMID:24589552)		 MGI PMID:22711701 PMID:24589552 NCBI chr17:34,035,526...34,064,215 JBrowse link
G REC8 REC8 meiotic recombination protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24589552)
(PMID:22711701)		 Ensembl
MGI		 PMID:22711701 PMID:24589552 GO_REF:0000107 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,125,537 		JBrowse link
G SHOC1 shortage in chiasmata 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:252,465,893...252,555,063
Ensembl chr 1:252,466,222...252,562,066 		JBrowse link
G SPO11 SPO11 initiator of meiotic double strand breaks involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27760146)
(PMID:24589552)		 Ensembl
MGI		 PMID:24589552 PMID:27760146 GO_REF:0000107 NCBI chr17:57,730,676...57,745,875
Ensembl chr17:57,730,675...57,745,875 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr14:141,726,708...141,737,830
Ensembl chr14:141,726,208...141,735,919 		JBrowse link
G SYCE2 synaptonemal complex central element protein 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:66,118,439...66,133,454
Ensembl chr 2:66,128,492...66,131,963 		JBrowse link
G SYCE3 synaptonemal complex central element protein 3 involved_in IEA
IBA		 InterPro
TreeGrafter
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:168,908...201,037
Ensembl chr 5:181,056...200,832 		JBrowse link
G SYCP1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22164254) InterPro
MGI
Ensembl		 PMID:22164254 GO_REF:0000002 GO_REF:0000107 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398 		JBrowse link
G SYCP3 synaptonemal complex protein 3 involved_in
acts_upstream_of_or_within		 ISO (MGI:1352918|PMID:10678170)
(PMID:22164254)		 UniProt
MGI		 PMID:10678170 PMID:22164254 MGI:1352918 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656 		JBrowse link
G SYDE1 synapse defective Rho GTPase homolog 1 acts_upstream_of_or_within ISO (PMID:23791195) MGI PMID:23791195 NCBI chr 2:62,447,030...62,453,944
Ensembl chr 2:62,447,037...62,453,949 		JBrowse link
G TERB2 telomere repeat binding bouquet formation protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30718482) Ensembl
MGI		 PMID:30718482 GO_REF:0000107 NCBI chr 1:126,738,520...126,767,948
Ensembl chr 1:126,738,663...126,768,126 		JBrowse link
G TEX11 testis expressed 11 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:18316482) Ensembl
MGI
GO_Central		 PMID:18316482 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:56,543,933...56,925,104
Ensembl chr  X:56,544,560...56,925,779 		JBrowse link
G TEX12 testis expressed 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22164254) Ensembl
MGI
TreeGrafter		 PMID:22164254 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:39,864,093...39,869,572
Ensembl chr 9:39,864,148...39,869,979 		JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18283110) TreeGrafter
MGI		 PMID:18283110 GO_REF:0000118 NCBI chr15:54,210,139...54,277,609 JBrowse link
G TRIP13 thyroid hormone receptor interactor 13 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr16:79,458,843...79,473,705
Ensembl chr16:79,458,847...79,473,712 		JBrowse link
lateral element assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SYCP1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:22164254) Ensembl
TreeGrafter
GO_Central
MGI		 PMID:22164254 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398 		JBrowse link
G SYCP3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO (PMID:22164254) MGI PMID:22164254 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17806
    reproductive process 1730
      meiotic cell cycle process 257
        chromosome organization involved in meiotic cell cycle 72
          synaptonemal complex assembly 26
            lateral element assembly 2
            positive regulation of synaptonemal complex assembly 0
            regulation of synaptonemal complex assembly + 0
Path 2
Term Annotations click to browse term
  biological_process 17806
    cellular process 16838
      cellular component organization or biogenesis 6738
        cellular component organization 6524
          organelle organization 3637
            organelle fission 530
              nuclear division 474
                meiotic nuclear division 228
                  meiosis I 147
                    homologous chromosome segregation 72
                      homologous chromosome pairing at meiosis 56
                        synaptonemal complex assembly 26
                          lateral element assembly 2
                          positive regulation of synaptonemal complex assembly 0
                          regulation of synaptonemal complex assembly + 0
paths to the root