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ONTOLOGY REPORT - ANNOTATIONS

Term:all-trans retinal binding
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Accession:GO:0005503 term browser browse the term
Definition:Binding to all-trans retinal, a compound that plays an important role in the visual process in most vertebrates. All-trans retinal (trans r., visual yellow) results from the bleaching of rhodopsin by light, in which the 11-cis form is converted to the all-trans form. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: all-trans retinaldehyde binding;   trans retinal binding;   visual yellow binding
 broad_synonym: vitamin A binding
 related_synonym: xanthopsin

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all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 enables IEA Ensembl GO_REF:0000107 NCBI chr20:39,140,288...39,271,169
Ensembl chr20:39,140,922...39,267,638 		JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide enables ISO (PMID:15369820) UniProt PMID:15369820 NCBI chr 7:47,226,787...47,248,518
Ensembl chr 7:47,226,191...47,248,234 		JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr10:2,998,621...3,035,268 JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr28:20,580,272...20,592,771
Ensembl chr28:20,582,287...20,591,497 		JBrowse link
G OPN3 opsin 3 enables IEA Ensembl GO_REF:0000107 NCBI chr25:78,671,900...78,720,697
Ensembl chr25:78,671,600...78,719,139 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18050
    binding 16493
      small molecule binding 5198
        vitamin binding 137
          retinal binding 12
            all-trans retinal binding 5
Path 2
Term Annotations click to browse term
  molecular_function 18050
    binding 16493
      lipid binding 812
        isoprenoid binding 34
          retinoid binding 31
            retinal binding 12
              all-trans retinal binding 5
paths to the root