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ONTOLOGY REPORT - ANNOTATIONS

Term:all-trans retinal binding
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Accession:GO:0005503 term browser browse the term
Definition:Binding to all-trans retinal, a compound that plays an important role in the visual process in most vertebrates. All-trans retinal (trans r., visual yellow) results from the bleaching of rhodopsin by light, in which the 11-cis form is converted to the all-trans form. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: all-trans retinaldehyde binding;   trans retinal binding;   visual yellow binding
 broad_synonym: vitamin A binding
 related_synonym: xanthopsin


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all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:55,058,361...55,186,255
Ensembl chr 6:55,058,361...55,186,253 		JBrowse link
G ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide enables IEA Ensembl GO_REF:0000107 NCBI chr32:21,282,526...21,299,387
Ensembl chr32:21,282,890...21,299,328 		JBrowse link
G CYP27C1 cytochrome P450 family 27 subfamily C member 1 enables ISO (PMID:27059013) UniProt PMID:27059013 NCBI chr19:23,374,295...23,400,054 JBrowse link
G CYP2W1 cytochrome P450 family 2 subfamily W member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:15,883,248...15,889,508
Ensembl chr 6:15,881,636...15,889,186 		JBrowse link
G OPN3 opsin 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:32,995,047...33,040,873
Ensembl chr 7:32,996,938...33,040,876 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18798
    binding 16663
      small molecule binding 5657
        vitamin binding 146
          retinal binding 12
            all-trans retinal binding 5
Path 2
Term Annotations click to browse term
  molecular_function 18798
    binding 16663
      lipid binding 853
        isoprenoid binding 39
          retinoid binding 36
            retinal binding 12
              all-trans retinal binding 5
paths to the root